{
    "type": "genome",
    "identifier": "GCF_019991125.1",
    "organism": "Phyllobacterium calauticae",
    "title": "Phyllobacterium calauticae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Aarhus University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_019991125.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18204865",
        "wgs_master": "JAGENB000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2817027",
        "species_taxid": "2817027",
        "organism_name": "Phyllobacterium calauticae",
        "infraspecific_name": "strain=R2-JL",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/14",
        "asm_name": "ASM1999112v1",
        "asm_submitter": "Aarhus University",
        "gbrs_paired_asm": "GCA_019991125.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/991/125/GCF_019991125.1_ASM1999112v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5292794",
        "genome_size_ungapped": "5292595",
        "gc_percent": "59.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_019991125.1-RS_2024_11_19",
        "annotation_date": "2024-11-19",
        "total_gene_count": "5186",
        "protein_coding_gene_count": "5069",
        "non_coding_gene_count": "63",
        "pubmed_id": "34491484"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-14",
    "dateModified": "2021-09-14",
    "datePublished": "2021-09-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phyllobacterium calauticae"
        ],
        "sample_taxid": [
            "2817027"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark: Aarhus University lake, Aarhus"
        ],
        "sample_host_location_id": [],
        "data_size": "1.486 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5292794",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "1191196",
        "N50 (bp)": "720379",
        "Gap Ratio (%)": "0.003760",
        "GCcontent (%)": "59.1",
        "Number of CDSs": "5180",
        "Average Protein Length": "302.1",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phyllobacterium calauticae",
                "strain": "strain=R2-JL",
                "accession": "GCA_019991125.1",
                "taxid": 2817027,
                "species_taxid": 2817027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1751,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=DSM 5892",
                "accession": "GCA_002980555.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.689,
                "matched_fragments": 1499,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=IAM 13584",
                "accession": "GCA_003182235.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6873,
                "matched_fragments": 1496,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=DSM 5892",
                "accession": "GCA_004217385.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6568,
                "matched_fragments": 1501,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium zundukense",
                "strain": "strain=Tri-48; RCAM 03910",
                "accession": "GCA_002764115.1",
                "taxid": 1867719,
                "species_taxid": 1867719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8574,
                "matched_fragments": 898,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium sophorae",
                "strain": "strain=CCBAU 03422",
                "accession": "GCA_003010965.1",
                "taxid": 1520277,
                "species_taxid": 1520277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2685,
                "matched_fragments": 847,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium brassicacearum",
                "strain": "strain=STM 196",
                "accession": "GCA_003010955.1",
                "taxid": 314235,
                "species_taxid": 314235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1112,
                "matched_fragments": 809,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium trifolii",
                "strain": "strain=CECT 7015",
                "accession": "GCA_014192095.1",
                "taxid": 300193,
                "species_taxid": 300193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8146,
                "matched_fragments": 780,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
                "strain": "strain=3P27G6",
                "accession": "GCA_005503535.1",
                "taxid": 2502215,
                "species_taxid": 2502215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9883,
                "matched_fragments": 481,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibium microcysteis",
                "strain": "strain=NIBR3",
                "accession": "GCA_014495845.1",
                "taxid": 675281,
                "species_taxid": 675281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4044,
                "matched_fragments": 381,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
                "strain": "strain=CAU 1489",
                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.28,
                "matched_fragments": 325,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquamicrobium zhengzhouense",
                "strain": "strain=cd-1",
                "accession": "GCA_016124105.1",
                "taxid": 2781738,
                "species_taxid": 2781738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1585,
                "matched_fragments": 200,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor alexandrii",
                "strain": "strain=Z3-1",
                "accession": "GCA_004000215.1",
                "taxid": 2448161,
                "species_taxid": 2448161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0487,
                "matched_fragments": 359,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900539805.1",
                "gtdb_species": "s__Phyllobacterium sp900539805",
                "ani": 98.5114,
                "matched_fragments": 1544,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.69",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002980555.1",
                "gtdb_species": "s__Phyllobacterium myrsinacearum",
                "ani": 92.689,
                "matched_fragments": 1499,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014138285.1",
                "gtdb_species": "s__Phyllobacterium myrsinacearum_A",
                "ani": 86.1587,
                "matched_fragments": 1322,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104355.1",
                "gtdb_species": "s__Phyllobacterium sp900104355",
                "ani": 84.4376,
                "matched_fragments": 1259,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900472835.1",
                "gtdb_species": "s__Phyllobacterium sp900472835",
                "ani": 84.3321,
                "matched_fragments": 1238,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCF_014189505.1",
                "gtdb_species": "s__Phyllobacterium sp014189505",
                "ani": 82.9003,
                "matched_fragments": 1119,
                "total_fragments": 1751,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.11,
        "cell_length": 0.201,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 4677947.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Phyllobacterium",
        "calauticae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}