{ "type": "genome", "identifier": "GCF_020005365.1", "organism": "Kangiella shandongensis", "title": "Kangiella shandongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Univesity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020005365.1", "bioproject": "PRJNA224116", "biosample": "SAMN15830580", "wgs_master": "JACNML000000000.1", "refseq_category": "reference genome", "taxid": "2763258", "species_taxid": "2763258", "organism_name": "Kangiella shandongensis", "infraspecific_name": "strain=PI", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/15", "asm_name": "ASM2000536v1", "asm_submitter": "Shandong Univesity", "gbrs_paired_asm": "GCA_020005365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/005/365/GCF_020005365.1_ASM2000536v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2809662", "genome_size_ungapped": "2809662", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020005365.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2675", "protein_coding_gene_count": "2616", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-15", "dateModified": "2021-09-15", "datePublished": "2021-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Kangiella shandongensis" ], "sample_taxid": [ "2763258" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yantai" ], "sample_host_location_id": [], "data_size": "0.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2809662", "Number of Sequences": "27", "Longest Sequences (bp)": "434682", "N50 (bp)": "308341", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.2", "Number of CDSs": "2616", "Average Protein Length": "320.1", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kangiella shandongensis", "strain": "strain=PI", "accession": "GCA_020005365.1", "taxid": 2763258, "species_taxid": 2763258, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 920, "total_fragments": 923, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kangiella sediminilitoris", "strain": "strain=KCTC 23892", "accession": "GCA_001708405.1", "taxid": 1144748, "species_taxid": 1144748, "relation_to_type": "type", "validated": true, "ani": 80.4329, "matched_fragments": 444, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella taiwanensis", "strain": "strain=KT1", "accession": "GCA_020005165.1", "taxid": 1079179, "species_taxid": 1079179, "relation_to_type": "type", "validated": true, "ani": 79.6754, "matched_fragments": 336, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella geojedonensis", "strain": "strain=YCS-5", "accession": "GCA_000981765.1", "taxid": 914150, "species_taxid": 914150, "relation_to_type": "type", "validated": true, "ani": 79.4982, "matched_fragments": 319, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella spongicola", "strain": "strain=ATCC BAA-2076", "accession": "GCA_003194565.2", "taxid": 796379, "species_taxid": 796379, "relation_to_type": "type", "validated": true, "ani": 79.111, "matched_fragments": 297, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella profundi", "strain": "strain=CGMCC 1.12959", "accession": "GCA_014640235.1", "taxid": 1561924, "species_taxid": 1561924, "relation_to_type": "type", "validated": true, "ani": 78.1496, "matched_fragments": 166, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella koreensis", "strain": "strain=DSM 16069", "accession": "GCA_000024085.1", "taxid": 261964, "species_taxid": 261964, "relation_to_type": "type", "validated": true, "ani": 77.576, "matched_fragments": 190, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001708405.1", "gtdb_species": "s__Kangiella sediminilitoris", "ani": 80.4194, "matched_fragments": 445, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000981765.1", "gtdb_species": "s__Kangiella geojedonensis", "ani": 79.5188, "matched_fragments": 319, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003194565.2", "gtdb_species": "s__Kangiella spongicola", "ani": 79.111, "matched_fragments": 297, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.32", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002838765.1", "gtdb_species": "s__Kangiella profundi", "ani": 78.119, "matched_fragments": 167, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000374105.1", "gtdb_species": "s__Kangiella aquimarina", "ani": 77.757, "matched_fragments": 157, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014762745.1", "gtdb_species": "s__Kangiella sp014762745", "ani": 77.6763, "matched_fragments": 161, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024085.1", "gtdb_species": "s__Kangiella koreensis", "ani": 77.5617, "matched_fragments": 193, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013372875.1", "gtdb_species": "s__Kangiella sp013372875", "ani": 76.5177, "matched_fragments": 51, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.38, "cell_length": 0.256, "doubling_h": null, "growth_tmp": 29.666, "optimum_tmp": 30.593, "optimum_ph": 7.35, "genome_size": 2635597.9, "gc_content": 43.677, "coding_genes": 2392.875, "rRNA16S_genes": 2.0, "tRNA_genes": 41.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kangiella", "shandongensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }