{ "type": "genome", "identifier": "GCF_020012125.1", "organism": "Hymenobacter psoromatis", "title": "Hymenobacter psoromatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020012125.1", "bioproject": "PRJNA224116", "biosample": "SAMN20425563", "wgs_master": "JAIFAG000000000.1", "refseq_category": "reference genome", "taxid": "1484116", "species_taxid": "1484116", "organism_name": "Hymenobacter psoromatis", "infraspecific_name": "strain=PAMC 26554", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/16", "asm_name": "ASM2001212v1", "asm_submitter": "Korea Polar Research Institute", "gbrs_paired_asm": "GCA_020012125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/012/125/GCF_020012125.1_ASM2001212v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5146772", "genome_size_ungapped": "5146772", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "4499", "protein_coding_gene_count": "4420", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-16", "dateModified": "2021-09-16", "datePublished": "2021-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter psoromatis" ], "sample_taxid": [ "1484116" ], "sample_host_organism": [ "Psoroma" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.438 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5146772", "Number of Sequences": "7", "Longest Sequences (bp)": "4840372", "N50 (bp)": "4840372", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "4431", "Average Protein Length": "336.0", "Coding Ratio (%)": "86.8", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter baengnokdamensis", "strain": "strain=BRD72", "accession": "GCA_008728635.1", "taxid": 2615203, "species_taxid": 2615203, "relation_to_type": "type", "validated": true, "ani": 82.1016, "matched_fragments": 1020, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter polaris", "strain": "strain=RP-2-7", "accession": "GCA_012927305.1", "taxid": 2682546, "species_taxid": 2682546, "relation_to_type": "type", "validated": true, "ani": 81.4775, "matched_fragments": 1114, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ginkgonis", "strain": "strain=HMF4947", "accession": "GCA_009755225.1", "taxid": 2682976, "species_taxid": 2682976, "relation_to_type": "type", "validated": true, "ani": 81.0572, "matched_fragments": 1013, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter caeli", "strain": "strain=9A", "accession": "GCA_013294115.1", "taxid": 2735894, "species_taxid": 2735894, "relation_to_type": "type", "validated": true, "ani": 80.8269, "matched_fragments": 936, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter coccineus", "strain": "strain=CCM 8649", "accession": "GCA_001816125.1", "taxid": 1908235, "species_taxid": 1908235, "relation_to_type": "type", "validated": true, "ani": 80.0922, "matched_fragments": 889, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter nivis", "strain": "strain=NBRC 111535", "accession": "GCA_003149515.1", "taxid": 1850093, "species_taxid": 1850093, "relation_to_type": "type", "validated": true, "ani": 80.0519, "matched_fragments": 898, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter setariae", "strain": "strain=Fur1", "accession": "GCA_007713685.1", "taxid": 2594794, "species_taxid": 2594794, "relation_to_type": "type", "validated": true, "ani": 79.8295, "matched_fragments": 919, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 79.3935, "matched_fragments": 841, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.2922, "matched_fragments": 818, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sedentarius", "strain": "strain=DG5B", "accession": "GCA_001507645.1", "taxid": 1411621, "species_taxid": 1411621, "relation_to_type": "type", "validated": true, "ani": 79.0301, "matched_fragments": 714, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aerophilus", "strain": 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2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 77.8133, "matched_fragments": 531, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 77.6793, "matched_fragments": 475, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001596155.1", "gtdb_species": "s__Hymenobacter sp001596155", "ani": 86.1512, "matched_fragments": 1277, "total_fragments": 1713, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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