{ "type": "genome", "identifier": "GCF_020025155.1", "organism": "Halopseudomonas nanhaiensis", "title": "Halopseudomonas nanhaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020025155.1", "bioproject": "PRJNA224116", "biosample": "SAMN18869291", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2830842", "species_taxid": "2830842", "organism_name": "Halopseudomonas nanhaiensis", "infraspecific_name": "strain=SCS 2-3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002515v1", "asm_submitter": "BIOTECHNOLOGY RESEARCH INSTITUTE, CAAS", "gbrs_paired_asm": "GCA_020025155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/025/155/GCF_020025155.1_ASM2002515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3653147", "genome_size_ungapped": "3653147", "gc_percent": "61.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020025155.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3380", "protein_coding_gene_count": "3291", "non_coding_gene_count": "64", "pubmed_id": "34392431" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas nanhaiensis" ], "sample_taxid": [ "2830842" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: the South China Sea" ], "sample_host_location_id": [], "data_size": "1.025 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3653147", "Number of Sequences": "1", "Longest Sequences (bp)": "3653147", "N50 (bp)": "3653147", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "3328", "Average Protein Length": "330.6", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, 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"matched_fragments": 456, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas salina", "strain": "strain=CGMCC 1.12482", "accession": "GCA_014637955.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 78.5685, "matched_fragments": 372, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 78.5475, "matched_fragments": 338, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas salina", "strain": "strain=XCD-X85", "accession": "GCA_008641105.1", "taxid": 1323744, "species_taxid": 1323744, "relation_to_type": "type", "validated": true, "ani": 78.5333, "matched_fragments": 368, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas saliphila", "strain": "strain=16W4-4-3", "accession": "GCA_008638345.1", "taxid": 2586906, "species_taxid": 2586906, "relation_to_type": "type", "validated": true, "ani": 78.5277, "matched_fragments": 442, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4865, "matched_fragments": 321, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 78.4356, "matched_fragments": 346, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 78.3748, "matched_fragments": 340, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 78.2716, "matched_fragments": 310, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_002891015.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 78.2707, "matched_fragments": 313, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 78.2042, "matched_fragments": 297, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 78.1642, "matched_fragments": 329, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 78.1507, "matched_fragments": 310, "total_fragments": 1217, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 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