{ "type": "genome", "identifier": "GCF_020026895.1", "organism": "Novilysobacter selenitireducens", "title": "Novilysobacter selenitireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020026895.1", "bioproject": "PRJNA224116", "biosample": "SAMN20982922", "wgs_master": "JAINZW000000000.1", "refseq_category": "reference genome", "taxid": "2872639", "species_taxid": "2872639", "organism_name": "Novilysobacter selenitireducens", "infraspecific_name": "strain=13A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002689v1", "asm_submitter": "Shandong University of Technology", "gbrs_paired_asm": "GCA_020026895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/026/895/GCF_020026895.1_ASM2002689v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3110147", "genome_size_ungapped": "3110147", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020026895.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2919", "protein_coding_gene_count": "2813", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Novilysobacter selenitireducens" ], "sample_taxid": [ "2872639" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Hengshui" ], "sample_host_location_id": [], "data_size": "0.844 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3110147", "Number of Sequences": "111", "Longest Sequences (bp)": "819146", "N50 (bp)": "742222", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "2846", "Average Protein Length": "324.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=DSM 18482", "accession": "GCA_000423325.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 81.9122, "matched_fragments": 571, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 81.8953, "matched_fragments": 616, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 81.7201, "matched_fragments": 649, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 81.718, "matched_fragments": 607, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter alkalisoli", "strain": "strain=SJ-36", "accession": "GCA_006547045.1", "taxid": 2591633, "species_taxid": 2591633, "relation_to_type": "type", "validated": true, "ani": 81.5941, "matched_fragments": 646, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 81.5718, "matched_fragments": 527, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter penaei", "strain": "strain=SG-8", 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435897, "relation_to_type": "type", "validated": true, "ani": 81.2047, "matched_fragments": 648, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 81.0225, "matched_fragments": 563, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 79.6158, "matched_fragments": 492, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001830245.1", "gtdb_species": "s__Lysobacter sp001830245", "ani": 92.8466, 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