{ "type": "genome", "identifier": "GCF_020026915.1", "organism": "Flavobacterium potami", "title": "Flavobacterium potami", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020026915.1", "bioproject": "PRJNA224116", "biosample": "SAMN20981949", "wgs_master": "JAINUY000000000.1", "refseq_category": "reference genome", "taxid": "2872310", "species_taxid": "2872310", "organism_name": "Flavobacterium potami", "infraspecific_name": "strain=17A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002691v1", "asm_submitter": "Shandong University of Technology", "gbrs_paired_asm": "GCA_020026915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/026/915/GCF_020026915.1_ASM2002691v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5695964", "genome_size_ungapped": "5695964", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020026915.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4881", "protein_coding_gene_count": "4778", "non_coding_gene_count": "72", "pubmed_id": "36574165" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium potami" ], "sample_taxid": [ "2872310" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong province, Dezhou, Fuyang River" ], "sample_host_location_id": [], "data_size": "1.584 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5695964", "Number of Sequences": "115", "Longest Sequences (bp)": "1448435", "N50 (bp)": "648677", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.0", "Number of CDSs": "4736", "Average Protein Length": "348.5", "Coding Ratio (%)": "86.9", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 87.171, "matched_fragments": 1348, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chungbukense", "strain": "strain=CS100", "accession": "GCA_020805785.1", "taxid": 877464, "species_taxid": 877464, "relation_to_type": "type", "validated": true, "ani": 86.2961, "matched_fragments": 1378, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ginsenosidimutans", "strain": "strain=THG 01", "accession": "GCA_003254625.1", "taxid": 687844, "species_taxid": 687844, "relation_to_type": "type", "validated": true, "ani": 86.2262, "matched_fragments": 1323, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 85.88, "matched_fragments": 1251, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sharifuzzamanii", "strain": "strain=A7.6", "accession": "GCA_003254585.1", "taxid": 2211133, "species_taxid": 2211133, "relation_to_type": "type", "validated": true, "ani": 85.6687, "matched_fragments": 1201, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=DSM 29982", "accession": "GCA_900182675.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 85.5932, "matched_fragments": 1215, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tistrianum", "strain": "strain=GB 56.1", "accession": "GCA_003254545.1", "taxid": 1685414, "species_taxid": 1685414, "relation_to_type": "type", "validated": true, "ani": 85.5757, "matched_fragments": 1197, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 85.5566, "matched_fragments": 1222, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ustbae", "strain": "strain=T13", "accession": "GCA_003946915.1", "taxid": 2488790, "species_taxid": 2488790, "relation_to_type": "type", "validated": true, "ani": 85.4978, "matched_fragments": 1232, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium anhuiense", "strain": "strain=CGMCC 1.6859", "accession": "GCA_900101855.1", "taxid": 459526, "species_taxid": 459526, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2674, "matched_fragments": 1235, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 84.8356, "matched_fragments": 1291, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 84.7307, "matched_fragments": 1335, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviale", "strain": "strain=HYN0086", "accession": "GCA_003312915.1", "taxid": 2249356, "species_taxid": 2249356, "relation_to_type": "type", "validated": true, "ani": 84.7095, "matched_fragments": 1211, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 84.138, "matched_fragments": 1172, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.8663, "matched_fragments": 1219, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zhairuonense", "strain": "strain=A5.7", "accession": "GCA_004352915.1", "taxid": 2493631, "species_taxid": 2493631, "relation_to_type": "type", "validated": true, "ani": 83.4727, "matched_fragments": 1078, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 83.33, "matched_fragments": 1050, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.1828, "matched_fragments": 1054, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.3438, "matched_fragments": 230, "total_fragments": 1881, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902167265.1", "gtdb_species": "s__Flavobacterium anhuiense_B", "ani": 87.6084, "matched_fragments": 1402, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014207905.1", "gtdb_species": "s__Flavobacterium notoginsengisoli", "ani": 86.4588, "matched_fragments": 1419, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003254625.1", "gtdb_species": "s__Flavobacterium ginsenosidimutans", "ani": 86.2351, "matched_fragments": 1322, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017744675.1", "gtdb_species": "s__Flavobacterium sp017744675", "ani": 86.1705, "matched_fragments": 1225, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"gtdb_species": "s__Flavobacterium sp013388355", "ani": 85.7799, "matched_fragments": 915, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254585.1", "gtdb_species": "s__Flavobacterium sharifuzzamanii", "ani": 85.6687, "matched_fragments": 1201, "total_fragments": 1881, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254545.1", "gtdb_species": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "potami" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }