{ "type": "genome", "identifier": "GCF_020026925.1", "organism": "Flavobacterium hibisci", "title": "Flavobacterium hibisci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020026925.1", "bioproject": "PRJNA224116", "biosample": "SAMN21197698", "wgs_master": "JAIQDW000000000.1", "refseq_category": "reference genome", "taxid": "1914462", "species_taxid": "1914462", "organism_name": "Flavobacterium hibisci", "infraspecific_name": "strain=THG-HG1.4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/17", "asm_name": "ASM2002692v1", "asm_submitter": "Shandong University of Technology", "gbrs_paired_asm": "GCA_020026925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/026/925/GCF_020026925.1_ASM2002692v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4946504", "genome_size_ungapped": "4946504", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020026925.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4189", "protein_coding_gene_count": "4090", "non_coding_gene_count": "64", "pubmed_id": "27902226" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-17", "dateModified": "2021-09-17", "datePublished": "2021-09-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium hibisci" ], "sample_taxid": [ "1914462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Gyeonggi,Yongin" ], "sample_host_location_id": [], "data_size": "1.385 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4946504", "Number of Sequences": "83", "Longest Sequences (bp)": "671400", "N50 (bp)": "206385", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "4068", "Average Protein Length": "354.1", "Coding Ratio (%)": "87.4", "Number of rRNAs": "5", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 86.0577, "matched_fragments": 1256, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 85.288, "matched_fragments": 1178, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ajazii", "strain": "strain=SSM4.2", "accession": "GCA_010614725.1", "taxid": 2692318, "species_taxid": 2692318, "relation_to_type": "type", "validated": true, "ani": 85.0085, "matched_fragments": 1126, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 82.2581, "matched_fragments": 885, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 82.1533, "matched_fragments": 866, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 82.1324, "matched_fragments": 843, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 82.0231, "matched_fragments": 904, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 81.9573, "matched_fragments": 819, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.7521, "matched_fragments": 826, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": 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