{ "type": "genome", "identifier": "GCF_020042285.1", "organism": "Ferruginibacter albus", "title": "Ferruginibacter albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020042285.1", "bioproject": "PRJNA224116", "biosample": "SAMN21364210", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2875540", "species_taxid": "2875540", "organism_name": "Ferruginibacter albus", "infraspecific_name": "strain=KIS38-8", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2004228v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_020042285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/042/285/GCF_020042285.1_ASM2004228v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3760165", "genome_size_ungapped": "3760165", "gc_percent": "36.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020042285.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "3214", "protein_coding_gene_count": "3162", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Ferruginibacter albus" ], "sample_taxid": [ "2875540" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Heuksan-myeon, Sinan-gun, Jeollanam-do" ], "sample_host_location_id": [], "data_size": "1.050 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3760165", "Number of Sequences": "1", "Longest Sequences (bp)": "3760165", "N50 (bp)": "3760165", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "3160", "Average Protein Length": "353.3", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1253, "total_fragments": 1253, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lacibacter cauensis", "strain": "strain=CGMCC 1.7271", "accession": "GCA_007830055.1", "taxid": 510947, "species_taxid": 510947, "relation_to_type": "type", "validated": true, "ani": 76.8677, "matched_fragments": 94, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pinibacter aurantiacus", "strain": "strain=MAH-26", "accession": "GCA_019130065.1", "taxid": 2851599, "species_taxid": 2851599, "relation_to_type": "type", "validated": true, "ani": 76.7758, "matched_fragments": 75, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella ginsengisoli", "strain": "strain=GR10-1", "accession": "GCA_022513635.1", "taxid": 522298, "species_taxid": 522298, "relation_to_type": "type", "validated": true, "ani": 76.6761, "matched_fragments": 71, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ginsengibacter hankyongi", "strain": "strain=BR5-29", "accession": "GCA_008710285.1", "taxid": 2607284, "species_taxid": 2607284, "relation_to_type": "type", "validated": true, "ani": 76.5288, "matched_fragments": 96, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea sandarakina", "strain": "strain=DSM 23241", "accession": "GCA_003254115.1", "taxid": 1004304, "species_taxid": 1004304, "relation_to_type": "type", "validated": true, "ani": 76.446, "matched_fragments": 56, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacibacter luteus", "strain": "strain=TTM-7", "accession": "GCA_004118265.1", "taxid": 2508719, "species_taxid": 2508719, "relation_to_type": "type", "validated": true, "ani": 76.3558, "matched_fragments": 109, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanamia caeni", "strain": "strain=BO-59", "accession": "GCA_003721595.1", "taxid": 2294116, "species_taxid": 2294116, "relation_to_type": "type", "validated": true, "ani": 76.25, "matched_fragments": 65, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 76.2019, "matched_fragments": 64, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 75.6285, "matched_fragments": 61, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017983695.1", "gtdb_species": "s__Ferruginibacter sp017983695", "ani": 76.9592, "matched_fragments": 176, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016715365.1", "gtdb_species": "s__Ferruginibacter sp016715365", "ani": 76.9524, "matched_fragments": 163, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_016722465.1", "gtdb_species": "s__Ferruginibacter sp016722465", "ani": 76.931, "matched_fragments": 156, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013141115.1", "gtdb_species": "s__Ferruginibacter sp013141115", "ani": 76.8373, "matched_fragments": 176, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019130065.1", "gtdb_species": "s__Parasegetibacter sp019130065", "ani": 76.7758, "matched_fragments": 75, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parasegetibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016703625.1", "gtdb_species": "s__Ferruginibacter sp016703625", "ani": 76.6728, "matched_fragments": 111, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002352045.1", "gtdb_species": "s__Ferruginibacter sp002352045", "ani": 76.5648, "matched_fragments": 116, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016713965.1", "gtdb_species": "s__Ferruginibacter sp016713965", "ani": 76.557, "matched_fragments": 108, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710165.1", "gtdb_species": "s__Ferruginibacter sp016710165", "ani": 76.5493, "matched_fragments": 92, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008710285.1", "gtdb_species": "s__Ginsengibacter hankyongi", "ani": 76.5288, "matched_fragments": 96, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ginsengibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710935.1", "gtdb_species": "s__Ferruginibacter sp016710935", "ani": 76.446, "matched_fragments": 154, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903837525.1", "gtdb_species": "s__Ferruginibacter sp903837525", "ani": 76.4249, "matched_fragments": 72, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268085.1", "gtdb_species": "s__Ferruginibacter sp018268085", "ani": 76.404, "matched_fragments": 120, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018266775.1", "gtdb_species": "s__Ferruginibacter sp018266775", "ani": 76.4039, "matched_fragments": 150, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002337145.1", "gtdb_species": "s__UBA1930 sp002337145", "ani": 76.356, "matched_fragments": 63, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__UBA1930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004118265.1", "gtdb_species": "s__Lacibacter luteus", "ani": 76.3558, "matched_fragments": 109, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268135.1", "gtdb_species": "s__Ferruginibacter sp018268135", "ani": 76.3014, "matched_fragments": 112, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004028795.1", "gtdb_species": "s__CW01 sp004028795", "ani": 76.2325, "matched_fragments": 109, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002400415.1", "gtdb_species": "s__JJ008 sp002400415", "ani": 76.1785, "matched_fragments": 64, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002127295.1", "gtdb_species": "s__JJ008 sp002127295", "ani": 76.1172, "matched_fragments": 71, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903841915.1", "gtdb_species": "s__CAILAF01 sp903841915", "ani": 75.9992, "matched_fragments": 55, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002050465.1", "gtdb_species": "s__Ginsengibacter sp002050465", "ani": 75.9786, "matched_fragments": 60, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ginsengibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903832075.1", "gtdb_species": "s__CAILAF01 sp903832075", "ani": 75.9268, "matched_fragments": 72, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826165.1", "gtdb_species": "s__JJ008 sp902826165", "ani": 75.8182, "matched_fragments": 70, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902168225.1", "gtdb_species": "s__Sediminibacterium sp902168225", "ani": 75.6272, "matched_fragments": 61, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.238, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ferruginibacter", "albus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }