{ "type": "genome", "identifier": "GCF_020075705.1", "organism": "Metabacillus rhizolycopersici", "title": "Metabacillus rhizolycopersici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020075705.1", "bioproject": "PRJNA224116", "biosample": "SAMN21393547", "wgs_master": "JAIQUM000000000.1", "refseq_category": "reference genome", "taxid": "2875709", "species_taxid": "2875709", "organism_name": "Metabacillus rhizolycopersici", "infraspecific_name": "strain=DBTR6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2007570v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_020075705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/075/705/GCF_020075705.1_ASM2007570v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5920298", "genome_size_ungapped": "5920298", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "355", "contig_count": "355", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020075705.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "5829", "protein_coding_gene_count": "5350", "non_coding_gene_count": "192", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Metabacillus rhizolycopersici" ], "sample_taxid": [ "2875709" ], "sample_host_organism": [ "tomato" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "1.678 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5920298", "Number of Sequences": "355", "Longest Sequences (bp)": "226389", "N50 (bp)": "59076", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "5468", "Average Protein Length": "274.6", "Coding Ratio (%)": "76.1", "Number of rRNAs": "9", "Number of tRNAs": "145", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 80.4968, "matched_fragments": 789, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus sediminilitoris", "strain": "strain=DSL-17", "accession": "GCA_009720625.1", "taxid": 2567941, "species_taxid": 2567941, "relation_to_type": "type", "validated": true, "ani": 80.4332, "matched_fragments": 811, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus sediminilitoris", "strain": "strain=DSL-17", "accession": "GCA_004801455.1", "taxid": 2567941, "species_taxid": 2567941, "relation_to_type": "type", "validated": true, "ani": 80.383, "matched_fragments": 804, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus crassostreae", "strain": "strain=DSM 24486", "accession": "GCA_016908395.1", "taxid": 929098, "species_taxid": 929098, "relation_to_type": "type", "validated": true, "ani": 78.962, "matched_fragments": 411, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus halosaccharovorans", "strain": "strain=DSM 25387", "accession": "GCA_002019635.1", "taxid": 930124, "species_taxid": 930124, "relation_to_type": "type", "validated": true, "ani": 78.8853, "matched_fragments": 409, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus schmidteae", "strain": "strain=Marseille-P9898", "accession": "GCA_903166545.1", "taxid": 2730405, "species_taxid": 2730405, "relation_to_type": "type", "validated": true, "ani": 78.7625, "matched_fragments": 408, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus litoralis", "strain": "strain=SW-211", "accession": "GCA_007994985.1", "taxid": 152268, "species_taxid": 152268, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5823, "matched_fragments": 427, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 78.5722, "matched_fragments": 411, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus weihaiensis", "strain": "strain=Alg07", "accession": "GCA_001889165.1", "taxid": 1547283, "species_taxid": 1547283, "relation_to_type": "type", "validated": true, "ani": 78.3246, "matched_fragments": 325, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus drentensis", "strain": "strain=FJAT-10044", "accession": "GCA_001636415.1", "taxid": 220684, "species_taxid": 220684, "relation_to_type": "type", "validated": true, "ani": 77.2758, "matched_fragments": 144, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, "relation_to_type": "type", "validated": true, "ani": 77.0428, "matched_fragments": 113, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus jeddahensis", "strain": "strain=JCE", "accession": "GCA_000612625.1", "taxid": 1461580, "species_taxid": 1461580, "relation_to_type": "type", "validated": true, "ani": 76.9486, "matched_fragments": 108, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.9065, "matched_fragments": 107, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_017809215.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.8577, "matched_fragments": 104, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_002009555.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.8264, "matched_fragments": 96, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 76.6747, "matched_fragments": 98, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus suaedaesalsae", "strain": "strain=RD4P76", "accession": "GCA_016890225.1", "taxid": 2810349, "species_taxid": 2810349, "relation_to_type": "type", "validated": true, "ani": 76.5845, "matched_fragments": 105, "total_fragments": 1837, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003259415.1", "gtdb_species": "s__Metabacillus sp003259415", "ani": 93.729, "matched_fragments": 1401, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217835.1", "gtdb_species": "s__Metabacillus litoralis_A", "ani": 80.518, "matched_fragments": 766, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017497975.1", "gtdb_species": "s__Metabacillus sp017497975", "ani": 80.4907, "matched_fragments": 790, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009720625.1", "gtdb_species": "s__Metabacillus sp004801455", "ani": 80.4608, "matched_fragments": 806, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000981385.1", "gtdb_species": "s__Metabacillus sp000981385", "ani": 79.2597, "matched_fragments": 584, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908395.1", "gtdb_species": "s__Metabacillus crassostreae", "ani": 78.9919, "matched_fragments": 406, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667825.1", "gtdb_species": "s__Metabacillus litoralis_B", "ani": 78.7182, "matched_fragments": 403, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007994985.1", "gtdb_species": "s__Metabacillus litoralis", "ani": 78.5699, "matched_fragments": 428, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001889165.1", "gtdb_species": "s__Metabacillus weihaiensis", "ani": 78.3351, "matched_fragments": 323, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001866655.1", "gtdb_species": "s__Neobacillus sp001866655", "ani": 77.3566, "matched_fragments": 186, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016107705.1", "gtdb_species": "s__Neobacillus cucumis_B", "ani": 77.1264, "matched_fragments": 155, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008764245.1", "gtdb_species": "s__Lederbergia ruris", "ani": 76.8883, "matched_fragments": 63, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Lederbergia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.48", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017809215.1", "gtdb_species": "s__Heyndrickxia oleronia", "ani": 76.8708, "matched_fragments": 101, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900112415.1", "gtdb_species": "s__Bacillus_A sp900112415", "ani": 76.7544, "matched_fragments": 137, "total_fragments": 1837, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Metabacillus", "rhizolycopersici" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }