{ "type": "genome", "identifier": "GCF_020076305.1", "organism": "Flavihumibacter profundi", "title": "Flavihumibacter profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020076305.1", "bioproject": "PRJNA224116", "biosample": "SAMN21437722", "wgs_master": "JAIQXE000000000.1", "refseq_category": "reference genome", "taxid": "2716883", "species_taxid": "2716883", "organism_name": "Flavihumibacter profundi", "infraspecific_name": "strain=KCTC 62290", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/20", "asm_name": "ASM2007630v1", "asm_submitter": "Inha University", "gbrs_paired_asm": "GCA_020076305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/076/305/GCF_020076305.1_ASM2007630v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4871809", "genome_size_ungapped": "4871809", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020076305.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4210", "protein_coding_gene_count": "4151", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-20", "dateModified": "2021-09-20", "datePublished": "2021-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavihumibacter profundi" ], "sample_taxid": [ "2716883" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4871809", "Number of Sequences": "6", "Longest Sequences (bp)": "2266000", "N50 (bp)": "1135311", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "4135", "Average Protein Length": "359.5", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavihumibacter profundi", "strain": "strain=KCTC 62290", "accession": "GCA_020076305.1", "taxid": 2716883, "species_taxid": 2716883, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1619, "total_fragments": 1620, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavihumibacter fluminis", "strain": "strain=IMCC34837", "accession": "GCA_018595675.2", "taxid": 2838157, "species_taxid": 2838157, "relation_to_type": "type", "validated": true, "ani": 79.4013, "matched_fragments": 709, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 77.883, "matched_fragments": 309, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter solisilvae", "strain": "strain=3-3", "accession": "GCA_000814475.1", "taxid": 1349421, "species_taxid": 1349421, "relation_to_type": "type", "validated": true, "ani": 77.6187, "matched_fragments": 244, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 77.242, "matched_fragments": 230, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 77.184, "matched_fragments": 198, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 77.1399, "matched_fragments": 213, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium goheungense", "strain": "strain=DSM 28323", "accession": "GCA_004361915.1", "taxid": 1086393, "species_taxid": 1086393, "relation_to_type": "type", "validated": true, "ani": 76.4555, "matched_fragments": 64, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 76.2966, "matched_fragments": 50, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.1329, "matched_fragments": 88, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 76.0148, "matched_fragments": 86, "total_fragments": 1620, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018595675.1", "gtdb_species": "s__Flavihumibacter sp018595675", "ani": 79.481, "matched_fragments": 703, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014332695.1", "gtdb_species": "s__Flavihumibacter stibioxidans", "ani": 77.8824, "matched_fragments": 307, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000814475.1", "gtdb_species": "s__Flavihumibacter solisilvae", "ani": 77.6089, "matched_fragments": 244, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000814325.1", "gtdb_species": "s__Flavihumibacter sp000814325", "ani": 77.5475, "matched_fragments": 245, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018595685.1", "gtdb_species": "s__Flavihumibacter sp018595685", "ani": 77.1538, "matched_fragments": 195, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016787265.1", "gtdb_species": "s__Flavihumibacter sp016787265", "ani": 77.1429, "matched_fragments": 222, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000974785.1", "gtdb_species": "s__Flavihumibacter petaseus", "ani": 77.1287, "matched_fragments": 213, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002483205.1", "gtdb_species": "s__Flavihumibacter sp002483205", "ani": 77.1115, "matched_fragments": 221, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016185185.1", "gtdb_species": "s__AWTP1-9 sp016185185", "ani": 76.6219, "matched_fragments": 59, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__AWTP1-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004361915.1", "gtdb_species": "s__Sediminibacterium goheungense", "ani": 76.4555, "matched_fragments": 64, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018993145.1", "gtdb_species": "s__Flavihumibacter sp018993145", "ani": 76.4175, "matched_fragments": 127, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002400415.1", "gtdb_species": "s__JJ008 sp002400415", "ani": 76.3638, "matched_fragments": 79, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000246855.1", "gtdb_species": "s__Niastella koreensis", "ani": 76.1329, "matched_fragments": 88, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002336115.1", "gtdb_species": "s__Lacibacter sp002336115", "ani": 75.8611, "matched_fragments": 57, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002390845.1", "gtdb_species": "s__Panacibacter sp002390845", "ani": 75.8514, "matched_fragments": 74, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016787085.1", "gtdb_species": "s__VBAT01 sp016787085", "ani": 75.6999, "matched_fragments": 71, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__VBAT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016786805.1", "gtdb_species": "s__JJ008 sp016786805", "ani": 75.6748, "matched_fragments": 58, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016715365.1", "gtdb_species": "s__Ferruginibacter sp016715365", "ani": 75.4415, "matched_fragments": 60, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Ferruginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_003175935.1", "gtdb_species": "s__Agriterribacter sp003175935", "ani": 75.1937, "matched_fragments": 53, "total_fragments": 1620, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Agriterribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.372, "cell_length": -0.28, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 28.0, "optimum_ph": 6.5, "genome_size": 5552088.5, "gc_content": 49.27, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavihumibacter", "profundi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }