{
    "type": "genome",
    "identifier": "GCF_020089505.1",
    "organism": "Leuconostoc gelidum subsp. aenigmaticum",
    "title": "Leuconostoc gelidum subsp. aenigmaticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Helsinki",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020089505.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19065388",
        "wgs_master": "JAHBGA000000000.1",
        "refseq_category": "na",
        "taxid": "1607837",
        "species_taxid": "1244",
        "organism_name": "Leuconostoc gelidum subsp. aenigmaticum",
        "infraspecific_name": "strain=DSM 19375",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/21",
        "asm_name": "ASM2008950v1",
        "asm_submitter": "University of Helsinki",
        "gbrs_paired_asm": "GCA_020089505.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/089/505/GCF_020089505.1_ASM2008950v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1944754",
        "genome_size_ungapped": "1944659",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-13",
        "total_gene_count": "1914",
        "protein_coding_gene_count": "1839",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-21",
    "dateModified": "2021-09-21",
    "datePublished": "2021-09-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leuconostoc gelidum subsp. aenigmaticum"
        ],
        "sample_taxid": [
            "1607837"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland:Helsinki"
        ],
        "sample_host_location_id": [],
        "data_size": "0.548 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1944754",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "1445491",
        "N50 (bp)": "1445491",
        "Gap Ratio (%)": "0.004885",
        "GCcontent (%)": "36.6",
        "Number of CDSs": "1883",
        "Average Protein Length": "300.1",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leuconostoc gelidum subsp. aenigmaticum",
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                "accession": "GCA_020089505.1",
                "taxid": 1607837,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 642,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. aenigmaticum",
                "strain": "strain=DSM 19375",
                "accession": "GCA_019655935.1",
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                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9903,
                "matched_fragments": 637,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. gelidum",
                "strain": "strain=KCTC 3527",
                "accession": "GCA_000166715.2",
                "taxid": 1607839,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.4063,
                "matched_fragments": 559,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. gasicomitatum",
                "strain": "strain=NBRC 113245",
                "accession": "GCA_019655955.1",
                "taxid": 115778,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6647,
                "matched_fragments": 553,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leuconostoc gelidum subsp. gasicomitatum",
                "strain": "strain=type strain: LMG 18811",
                "accession": "GCA_000196855.1",
                "taxid": 115778,
                "species_taxid": 1244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6182,
                "matched_fragments": 561,
                "total_fragments": 643,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000166715.1",
                "gtdb_species": "s__Leuconostoc gelidum",
                "ani": 96.4063,
                "matched_fragments": 559,
                "total_fragments": 643,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000166735.2",
                "gtdb_species": "s__Leuconostoc inhae",
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                "matched_fragments": 448,
                "total_fragments": 643,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_014207505.1",
                "gtdb_species": "s__Leuconostoc carnosum",
                "ani": 80.0051,
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                "total_fragments": 643,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_000092505.1",
                "gtdb_species": "s__Leuconostoc kimchii",
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                "matched_fragments": 338,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016908715.1",
                "gtdb_species": "s__Leuconostoc rapi",
                "ani": 79.8881,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004354555.1",
                "gtdb_species": "s__Leuconostoc citreum",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
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            },
            {
                "accession": "GCF_007954625.1",
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                "matched_fragments": 197,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_014651235.1",
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                "matched_fragments": 176,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
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                "num_clustered_genomes": 22,
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            },
            {
                "accession": "GCF_014634745.1",
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                "matched_fragments": 156,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
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                "mean_intra_species_ani": "97.98",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.149,
        "cell_length": 0.058,
        "doubling_h": null,
        "growth_tmp": 24.0,
        "optimum_tmp": 17.25,
        "optimum_ph": 7.0,
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        "gc_content": 36.75,
        "coding_genes": 1852.833,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 66.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.416,
        "anaerobic_respiration": 0.083,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Leuconostoc",
        "gelidum",
        "subsp.",
        "aenigmaticum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}