{ "type": "genome", "identifier": "GCF_020091585.1", "organism": "Kovacikia minuta CCNUW1", "title": "Kovacikia minuta CCNUW1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Central China Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020091585.1", "bioproject": "PRJNA224116", "biosample": "SAMN21366140", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2653194", "species_taxid": "2931930", "organism_name": "Kovacikia minuta CCNUW1", "infraspecific_name": "strain=CCNU0001", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ASM2009158v1", "asm_submitter": "Central China Normal University", "gbrs_paired_asm": "GCA_020091585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/091/585/GCF_020091585.1_ASM2009158v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8564336", "genome_size_ungapped": "8564336", "gc_percent": "49.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020091585.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "8277", "protein_coding_gene_count": "7861", "non_coding_gene_count": "124", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Kovacikia minuta CCNUW1" ], "sample_taxid": [ "2653194" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wuhan" ], "sample_host_location_id": [], "data_size": "2.422 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8564336", "Number of Sequences": "3", "Longest Sequences (bp)": "7298027", "N50 (bp)": "7298027", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.3", "Number of CDSs": "7938", "Average Protein Length": "291.2", "Coding Ratio (%)": "81.0", "Number of rRNAs": "4", "Number of tRNAs": "114", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kovacikia minuta", "strain": "strain=CCNU0001", "accession": "GCA_020091585.1", "taxid": 2931930, "species_taxid": 2931930, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2853, 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"below_threshold" }, { "organism_name": "Leptodesmis sichuanensis", "strain": "strain=PKUAC-SCTA121", "accession": "GCA_021379005.1", "taxid": 2906798, "species_taxid": 2906798, "relation_to_type": "type", "validated": true, "ani": 76.5422, "matched_fragments": 225, "total_fragments": 2853, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoleptolyngbya sichuanensis", "strain": "strain=PKUAC-SCTA183", "accession": "GCA_013177315.1", "taxid": 2885951, "species_taxid": 2885951, "relation_to_type": "type", "validated": true, "ani": 76.3914, "matched_fragments": 124, "total_fragments": 2853, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirulina major", "strain": "strain=PCC 6313", "accession": "GCA_001890765.1", "taxid": 270636, "species_taxid": 270636, "relation_to_type": "type", "validated": true, "ani": 76.1915, "matched_fragments": 59, "total_fragments": 2853, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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