{
    "type": "genome",
    "identifier": "GCF_020092305.1",
    "organism": "Streptomyces olivaceus",
    "title": "Streptomyces olivaceus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020092305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19960598",
        "wgs_master": "JAHSTE000000000.1",
        "refseq_category": "na",
        "taxid": "47716",
        "species_taxid": "47716",
        "organism_name": "Streptomyces olivaceus",
        "infraspecific_name": "strain=CGMCC 4.1369",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/22",
        "asm_name": "ASM2009230v1",
        "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_020092305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/092/305/GCF_020092305.1_ASM2009230v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8599360",
        "genome_size_ungapped": "8599360",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "58",
        "contig_count": "58",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020092305.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "7576",
        "protein_coding_gene_count": "7336",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-22",
    "dateModified": "2021-09-22",
    "datePublished": "2021-09-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces olivaceus"
        ],
        "sample_taxid": [
            "47716"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.294 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 5.21,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8599360",
        "Number of Sequences": "58",
        "Longest Sequences (bp)": "1023031",
        "N50 (bp)": "405348",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.4",
        "Number of CDSs": "7531",
        "Average Protein Length": "333.8",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces olivaceus",
                "strain": "strain=NRRL B-3009",
                "accession": "GCA_000721235.1",
                "taxid": 47716,
                "species_taxid": 47716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9636,
                "matched_fragments": 2776,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces olivaceus",
                "strain": "strain=NRRL B-3009",
                "accession": "GCA_015645455.1",
                "taxid": 47716,
                "species_taxid": 47716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0965,
                "matched_fragments": 2449,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces tendae",
                "strain": "strain=JCM 4610",
                "accession": "GCA_014650435.1",
                "taxid": 1932,
                "species_taxid": 1932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0834,
                "matched_fragments": 2014,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces anthocyanicus",
                "strain": "strain=JCM 5058",
                "accession": "GCA_014651155.1",
                "taxid": 68174,
                "species_taxid": 68174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9576,
                "matched_fragments": 2009,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces hyderabadensis",
                "strain": "strain=JCM 17657",
                "accession": "GCA_020404845.1",
                "taxid": 598549,
                "species_taxid": 598549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9306,
                "matched_fragments": 1962,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rubrogriseus",
                "strain": "strain=NBRC 15455",
                "accession": "GCA_003112595.1",
                "taxid": 194673,
                "species_taxid": 194673,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9199,
                "matched_fragments": 2037,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces violaceorubidus",
                "strain": "strain=NRRL B-16381",
                "accession": "GCA_000717995.1",
                "taxid": 284042,
                "species_taxid": 284042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7861,
                "matched_fragments": 1873,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces ardesiacus",
                "strain": "strain=NBRC 15402",
                "accession": "GCA_003112575.1",
                "taxid": 285564,
                "species_taxid": 285564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7718,
                "matched_fragments": 1977,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces ambofaciens",
                "strain": "strain=ATCC 23877",
                "accession": "GCA_001267885.1",
                "taxid": 1889,
                "species_taxid": 1889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4185,
                "matched_fragments": 1884,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces flaveolus",
                "strain": "strain=JCM 4032",
                "accession": "GCA_014648815.1",
                "taxid": 67297,
                "species_taxid": 67297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2594,
                "matched_fragments": 1794,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces solaniscabiei",
                "strain": "strain=FS70",
                "accession": "GCA_020312315.1",
                "taxid": 2683255,
                "species_taxid": 2683255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1964,
                "matched_fragments": 1781,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseicoloratus",
                "strain": "strain=TRM S81-3",
                "accession": "GCA_014534645.1",
                "taxid": 2752516,
                "species_taxid": 2752516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1975,
                "matched_fragments": 1787,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4462,
                "matched_fragments": 1504,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces purpurascens",
                "strain": "strain=DSM 40310",
                "accession": "GCA_021390235.1",
                "taxid": 1924,
                "species_taxid": 1924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8352,
                "matched_fragments": 1721,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cahuitamycinicus",
                "strain": "strain=13K301",
                "accession": "GCA_002891435.1",
                "taxid": 2070367,
                "species_taxid": 2070367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7651,
                "matched_fragments": 1404,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces blattellae",
                "strain": "strain=TRM63209",
                "accession": "GCA_009709555.1",
                "taxid": 2569855,
                "species_taxid": 2569855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0791,
                "matched_fragments": 1552,
                "total_fragments": 2840,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 5.21,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000721235.1",
                "gtdb_species": "s__Streptomyces olivaceus",
                "ani": 99.9636,
                "matched_fragments": 2776,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018982965.1",
                "gtdb_species": "s__Streptomyces sp018982965",
                "ani": 93.0511,
                "matched_fragments": 2082,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002939385.1",
                "gtdb_species": "s__Streptomyces sp002939385",
                "ani": 90.2418,
                "matched_fragments": 1905,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.14",
                "min_intra_species_ani": "95.04",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014650435.1",
                "gtdb_species": "s__Streptomyces tendae",
                "ani": 90.1173,
                "matched_fragments": 2011,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.72",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003369795.1",
                "gtdb_species": "s__Streptomyces sp003369795",
                "ani": 90.0769,
                "matched_fragments": 1904,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.3499,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000772045.1",
                "gtdb_species": "s__Streptomyces sp000772045",
                "ani": 89.9574,
                "matched_fragments": 1994,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.88",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_003112595.1",
                "gtdb_species": "s__Streptomyces rubrogriseus",
                "ani": 89.9413,
                "matched_fragments": 2033,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.9168,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014651155.1",
                "gtdb_species": "s__Streptomyces anthocyanicus",
                "ani": 89.9207,
                "matched_fragments": 2013,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.9168,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 31,
                "status": "-"
            },
            {
                "accession": "GCF_003112555.1",
                "gtdb_species": "s__Streptomyces coelicoflavus",
                "ani": 89.9048,
                "matched_fragments": 2019,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000717995.1",
                "gtdb_species": "s__Streptomyces violaceorubidus",
                "ani": 89.7899,
                "matched_fragments": 1873,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003112575.1",
                "gtdb_species": "s__Streptomyces ardesiacus",
                "ani": 89.7531,
                "matched_fragments": 1980,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_003671715.1",
                "gtdb_species": "s__Streptomyces sp003671715",
                "ani": 89.0709,
                "matched_fragments": 1879,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001905385.1",
                "gtdb_species": "s__Streptomyces sp001905385",
                "ani": 88.9841,
                "matched_fragments": 1860,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.01",
                "min_intra_species_ani": "96.01",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014648815.1",
                "gtdb_species": "s__Streptomyces flaveolus",
                "ani": 88.2881,
                "matched_fragments": 1790,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002005565.1",
                "gtdb_species": "s__Streptomyces sp002005565",
                "ani": 88.1408,
                "matched_fragments": 1725,
                "total_fragments": 2840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8054100.0,
        "gc_content": 72.4,
        "coding_genes": 6494.0,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 66.0,
        "gram_stain": 1.0,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "olivaceus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}