{ "type": "genome", "identifier": "GCF_020097815.1", "organism": "Haloprofundus salinisoli", "title": "Haloprofundus salinisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020097815.1", "bioproject": "PRJNA224116", "biosample": "SAMN21437959", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2876193", "species_taxid": "2876193", "organism_name": "Haloprofundus salinisoli", "infraspecific_name": "strain=SQT7-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/23", "asm_name": "ASM2009781v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_020097815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/097/815/GCF_020097815.1_ASM2009781v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3421753", "genome_size_ungapped": "3421753", "gc_percent": "64.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020097815.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3530", "protein_coding_gene_count": "3430", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-23", "dateModified": "2021-09-23", "datePublished": "2021-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloprofundus salinisoli" ], "sample_taxid": [ "2876193" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "0.934 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3421753", "Number of Sequences": "3", "Longest Sequences (bp)": "3017014", "N50 (bp)": "3017014", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3443", "Average Protein Length": "283.0", "Coding Ratio (%)": "85.4", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloprofundus halophilus", "strain": "strain=NK23", "accession": "GCA_003439925.1", "taxid": 2283527, "species_taxid": 2283527, "relation_to_type": "type", "validated": true, "ani": 89.9789, "matched_fragments": 933, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloprofundus marisrubri", "strain": "strain=SB9", "accession": "GCA_001469955.1", "taxid": 1514971, "species_taxid": 1514971, "relation_to_type": "type", "validated": true, "ani": 87.0484, "matched_fragments": 898, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halogranum amylolyticum", "strain": "strain=CGMCC 1.10121", "accession": "GCA_900110465.1", "taxid": 660520, "species_taxid": 660520, "relation_to_type": "type", "validated": true, "ani": 80.2678, "matched_fragments": 617, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halogranum gelatinilyticum", "strain": "strain=CGMCC 1.10119", "accession": "GCA_900103715.1", "taxid": 660521, "species_taxid": 660521, "relation_to_type": "type", "validated": true, "ani": 80.0533, "matched_fragments": 575, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax sulfurifontis", "strain": "strain=CCM 7217", "accession": "GCA_014635105.1", "taxid": 255616, "species_taxid": 255616, "relation_to_type": "type", "validated": true, "ani": 79.8804, "matched_fragments": 573, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halegenticoccus tardaugens", "strain": "strain=SYSU A00711", "accession": "GCA_004116405.1", "taxid": 2071624, "species_taxid": 2071624, "relation_to_type": "type", "validated": true, "ani": 79.8778, "matched_fragments": 607, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax prahovense", "strain": "strain=DSM 18310", "accession": "GCA_000336815.1", "taxid": 381852, "species_taxid": 381852, "relation_to_type": "type", "validated": true, "ani": 79.8095, "matched_fragments": 543, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax gibbonsii", "strain": "strain=ATCC 33959", "accession": "GCA_000336775.1", "taxid": 35746, "species_taxid": 35746, "relation_to_type": "type", "validated": true, "ani": 79.7671, "matched_fragments": 574, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax volcanii", "strain": "strain=DS2", "accession": "GCA_000337315.1", "taxid": 2246, "species_taxid": 2246, "relation_to_type": "type", "validated": true, "ani": 79.6702, "matched_fragments": 562, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halogeometricum rufum", "strain": "strain=CGMCC 1.7736", "accession": "GCA_900112175.1", "taxid": 553469, "species_taxid": 553469, "relation_to_type": "type", "validated": true, "ani": 79.5883, "matched_fragments": 617, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halostella salina", "strain": "strain=CBA1114", "accession": "GCA_003675855.1", "taxid": 1547897, "species_taxid": 1547897, "relation_to_type": "type", "validated": true, "ani": 78.2834, "matched_fragments": 452, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003439925.1", "gtdb_species": "s__Haloprofundus halophilus", "ani": 89.993, "matched_fragments": 932, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloprofundus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001469955.1", "gtdb_species": "s__Haloprofundus marisrubri", "ani": 87.037, "matched_fragments": 899, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloprofundus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110465.1", "gtdb_species": "s__Halogranum amylolyticum", "ani": 80.2406, "matched_fragments": 622, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000337835.1", "gtdb_species": "s__Haloferax sulfurifontis", "ani": 80.0859, "matched_fragments": 551, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax", "ani_circumscription_radius": 96.9285, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900103715.1", "gtdb_species": "s__Halogranum gelatinilyticum", "ani": 80.0441, "matched_fragments": 576, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004116405.1", "gtdb_species": "s__Halegenticoccus sp004116405", "ani": 79.8771, "matched_fragments": 607, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halegenticoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000336775.1", "gtdb_species": "s__Haloferax gibbonsii", "ani": 79.7898, "matched_fragments": 571, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax", "ani_circumscription_radius": 96.8304, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000025685.1", "gtdb_species": "s__Haloferax volcanii", "ani": 79.7822, "matched_fragments": 557, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.62", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_000336815.1", "gtdb_species": "s__Haloferax prahovense", "ani": 79.7818, "matched_fragments": 545, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax", "ani_circumscription_radius": 96.8304, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900112175.1", "gtdb_species": "s__Halogeometricum rufum", "ani": 79.5972, "matched_fragments": 615, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003675855.1", "gtdb_species": "s__Halostella salina", "ani": 78.2948, "matched_fragments": 453, "total_fragments": 1139, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__QS-9-68-17;g__Halostella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 3924651.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Haloprofundus", "salinisoli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }