{ "type": "genome", "identifier": "GCF_020148005.1", "organism": "Modicisalibacter tunisiensis", "title": "Modicisalibacter tunisiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UNICAMP", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020148005.1", "bioproject": "PRJNA224116", "biosample": "SAMN18912866", "wgs_master": "JAGXFD000000000.1", "refseq_category": "reference genome", "taxid": "390637", "species_taxid": "390637", "organism_name": "Modicisalibacter tunisiensis", "infraspecific_name": "strain=LIT2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/24", "asm_name": "ASM2014800v1", "asm_submitter": "UNICAMP", "gbrs_paired_asm": "GCA_020148005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/148/005/GCF_020148005.1_ASM2014800v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3550803", "genome_size_ungapped": "3550493", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020148005.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "3339", "protein_coding_gene_count": "3238", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-24", "dateModified": "2021-09-24", "datePublished": "2021-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter tunisiensis" ], "sample_taxid": [ "390637" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tunisia" ], "sample_host_location_id": [], "data_size": "0.967 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3550803", "Number of Sequences": "8", "Longest Sequences (bp)": "3219732", "N50 (bp)": "3219732", "Gap Ratio (%)": "0.008730", "GCcontent (%)": "67.4", "Number of CDSs": "3270", "Average Protein Length": "323.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "5", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 83.397, "matched_fragments": 764, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 82.9202, "matched_fragments": 664, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 82.8078, "matched_fragments": 674, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 82.6277, "matched_fragments": 684, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 82.5304, "matched_fragments": 699, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 82.3525, "matched_fragments": 671, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.3229, "matched_fragments": 645, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 82.2721, "matched_fragments": 678, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 82.2553, "matched_fragments": 677, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 82.1686, "matched_fragments": 634, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 80.6189, "matched_fragments": 538, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010993675.1", "gtdb_species": "s__Halomonas_C sp010993675", "ani": 96.8076, "matched_fragments": 1065, "total_fragments": 1179, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Modicisalibacter", "tunisiensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }