{ "type": "genome", "identifier": "GCF_020165855.1", "organism": "Celeribacter litoreus", "title": "Celeribacter litoreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanxi Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020165855.1", "bioproject": "PRJNA224116", "biosample": "SAMN21450436", "wgs_master": "JAIUFY000000000.1", "refseq_category": "reference genome", "taxid": "2876714", "species_taxid": "2876714", "organism_name": "Celeribacter litoreus", "infraspecific_name": "strain=ASW11-22", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/25", "asm_name": "ASM2016585v1", "asm_submitter": "Shanxi Agricultural University", "gbrs_paired_asm": "GCA_020165855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/165/855/GCF_020165855.1_ASM2016585v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3655420", "genome_size_ungapped": "3655225", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020165855.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "3559", "protein_coding_gene_count": "3484", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-25", "dateModified": "2021-09-25", "datePublished": "2021-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Celeribacter litoreus" ], "sample_taxid": [ "2876714" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" ], "sample_host_location_id": [], "data_size": "1.033 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3655420", "Number of Sequences": "16", "Longest Sequences (bp)": "1097402", "N50 (bp)": "391763", "Gap Ratio (%)": "0.005553", "GCcontent (%)": "58.8", "Number of CDSs": "3547", "Average Protein Length": "310.9", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1209, "total_fragments": 1209, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Celeribacter ethanolicus", "strain": "strain=NH195", "accession": "GCA_001550095.1", "taxid": 1758178, "species_taxid": 1758178, "relation_to_type": "type", "validated": true, "ani": 79.95, "matched_fragments": 582, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter neptunius", "strain": "strain=DSM 26471", "accession": "GCA_900113955.1", "taxid": 588602, "species_taxid": 588602, "relation_to_type": "type", "validated": true, "ani": 79.7023, "matched_fragments": 588, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter persicus", "strain": "strain=DSM 100434", "accession": "GCA_003050785.1", "taxid": 1651082, "species_taxid": 1651082, "relation_to_type": "type", "validated": true, "ani": 79.5338, "matched_fragments": 542, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=DSM 26270", "accession": "GCA_003254175.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.4596, "matched_fragments": 478, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=CGMCC 1.8891", "accession": "GCA_900114135.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.4192, "matched_fragments": 478, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=ZXM137", "accession": "GCA_001550085.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.3951, "matched_fragments": 485, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_900106965.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 78.3944, "matched_fragments": 438, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 78.3669, "matched_fragments": 442, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.6207, "matched_fragments": 251, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 76.926, "matched_fragments": 143, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_004345735.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 76.9012, "matched_fragments": 145, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificibacter marinus", "strain": "strain=DSM 25228", "accession": "GCA_900109555.1", "taxid": 658057, "species_taxid": 658057, "relation_to_type": "type", "validated": true, "ani": 76.8913, "matched_fragments": 144, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, 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"matched_fragments": 85, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus bogoriensis", "strain": "strain=BOG6", "accession": "GCA_019431455.1", "taxid": 242065, "species_taxid": 242065, "relation_to_type": "type", "validated": true, "ani": 75.8908, "matched_fragments": 113, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011806455.1", "gtdb_species": "s__Celeribacter sp011806455", "ani": 80.0784, "matched_fragments": 548, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001550095.1", "gtdb_species": "s__Celeribacter ethanolicus", "ani": 79.9406, "matched_fragments": 583, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900113955.1", "gtdb_species": "s__Celeribacter neptunius", "ani": 79.7023, "matched_fragments": 588, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003050785.1", "gtdb_species": "s__Celeribacter persicus", "ani": 79.5338, "matched_fragments": 542, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114135.1", "gtdb_species": "s__Celeribacter halophilus", "ani": 79.4092, "matched_fragments": 479, "total_fragments": 1209, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Celeribacter", "litoreus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }