{ "type": "genome", "identifier": "GCF_020166345.1", "organism": "Winogradskyella vincentii", "title": "Winogradskyella vincentii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ShanDongUniversity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020166345.1", "bioproject": "PRJNA224116", "biosample": "SAMN21500261", "wgs_master": "JAIUJS000000000.1", "refseq_category": "reference genome", "taxid": "2877122", "species_taxid": "2877122", "organism_name": "Winogradskyella vincentii", "infraspecific_name": "strain=2Y89", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/26", "asm_name": "ASM2016634v1", "asm_submitter": "ShanDongUniversity", "gbrs_paired_asm": "GCA_020166345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/166/345/GCF_020166345.1_ASM2016634v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3294130", "genome_size_ungapped": "3294130", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020166345.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3036", "protein_coding_gene_count": "2973", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-26", "dateModified": "2021-09-26", "datePublished": "2021-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella vincentii" ], "sample_taxid": [ "2877122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3294130", "Number of Sequences": "64", "Longest Sequences (bp)": "703124", "N50 (bp)": "585269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.6", "Number of CDSs": "2923", "Average Protein Length": "340.3", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 78.7296, "matched_fragments": 343, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 78.5014, "matched_fragments": 388, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 78.1827, "matched_fragments": 369, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.1672, "matched_fragments": 407, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 78.1488, "matched_fragments": 409, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, "species_taxid": 1884876, "relation_to_type": "type", "validated": true, "ani": 78.0785, "matched_fragments": 391, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 78.05, "matched_fragments": 333, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 78.0422, "matched_fragments": 356, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 77.9655, "matched_fragments": 322, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=KCTC 12220", "accession": "GCA_014651315.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 77.8985, "matched_fragments": 249, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella jejuensis", "strain": "strain=DSM 25330", "accession": "GCA_900129745.1", "taxid": 1089305, "species_taxid": 1089305, "relation_to_type": "type", "validated": true, "ani": 77.8888, "matched_fragments": 257, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ursingii", "strain": "strain=HL4150", "accession": "GCA_013403975.1", "taxid": 2686079, "species_taxid": 2686079, "relation_to_type": "type", "validated": true, "ani": 77.8761, "matched_fragments": 268, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 77.8737, "matched_fragments": 247, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 77.842, "matched_fragments": 269, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.6778, "matched_fragments": 210, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 77.6587, "matched_fragments": 337, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 77.5228, "matched_fragments": 219, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 77.433, "matched_fragments": 102, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 77.3727, "matched_fragments": 203, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.9974, "matched_fragments": 123, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 76.9536, "matched_fragments": 123, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola marinus", "strain": "strain=B011", "accession": "GCA_008085455.1", "taxid": 1912246, "species_taxid": 1912246, "relation_to_type": "type", "validated": true, "ani": 76.9221, "matched_fragments": 161, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 76.6823, "matched_fragments": 103, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.6798, "matched_fragments": 170, "total_fragments": 1076, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003335675.1", "gtdb_species": "s__Winogradskyella sp003335675", "ani": 93.4027, "matched_fragments": 808, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009709615.1", "gtdb_species": "s__Winogradskyella ouciana", "ani": 78.7421, "matched_fragments": 342, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005869935.1", "gtdb_species": "s__Winogradskyella algicola", "ani": 78.4958, "matched_fragments": 389, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019203985.1", "gtdb_species": "s__Winogradskyella sp019203985", "ani": 78.4389, "matched_fragments": 332, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000171875.1", "gtdb_species": "s__Winogradskyella sp000171875", "ani": 78.3795, "matched_fragments": 417, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001971725.1", "gtdb_species": "s__Winogradskyella sp001971725", "ani": 78.2765, "matched_fragments": 355, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002682935.1", "gtdb_species": "s__Winogradskyella sp002682935", "ani": 78.2615, "matched_fragments": 341, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002722255.1", "gtdb_species": "s__Winogradskyella sp002722255", "ani": 78.2197, "matched_fragments": 331, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013249065.1", "gtdb_species": "s__Winogradskyella litoriviva", "ani": 78.1733, "matched_fragments": 370, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014297365.1", "gtdb_species": "s__Winogradskyella echinorum", "ani": 78.1579, "matched_fragments": 408, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014243395.1", "gtdb_species": "s__Winogradskyella flava", "ani": 78.0791, "matched_fragments": 391, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013213835.1", "gtdb_species": "s__Winogradskyella sp013213835", "ani": 78.0301, "matched_fragments": 329, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002163855.1", "gtdb_species": "s__Winogradskyella sp002163855", "ani": 78.0285, "matched_fragments": 268, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900099995.1", "gtdb_species": "s__Winogradskyella thalassocola", "ani": 77.9655, "matched_fragments": 322, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003217215.1", "gtdb_species": "s__Winogradskyella epiphytica", "ani": 77.9184, "matched_fragments": 253, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003386165.1", "gtdb_species": "s__Winogradskyella eximia", "ani": 77.8865, "matched_fragments": 345, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004346845.1", "gtdb_species": "s__Winogradskyella wandonensis", "ani": 77.8737, "matched_fragments": 247, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002364335.1", "gtdb_species": "s__Winogradskyella sp002364335", "ani": 77.8706, "matched_fragments": 347, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000797465.1", "gtdb_species": "s__Psychroserpens jangbogonensis", "ani": 77.5228, "matched_fragments": 219, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001874145.1", "gtdb_species": "s__Lacinutrix sp001874145", "ani": 77.4512, "matched_fragments": 178, "total_fragments": 1076, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lacinutrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.434, "cell_length": 0.145, "doubling_h": null, "growth_tmp": 25.6, "optimum_tmp": 26.458, "optimum_ph": 7.642, "genome_size": 3803524.5, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.5, "motility": 0.909, "range_salinity": null, "facultative_respiration": 0.125, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.875, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Winogradskyella", "vincentii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }