{ "type": "genome", "identifier": "GCF_020216525.1", "organism": "Nocardioides nematodiphilus", "title": "Nocardioides nematodiphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020216525.1", "bioproject": "PRJNA224116", "biosample": "SAMN19782992", "wgs_master": "JAIWOY000000000.1", "refseq_category": "reference genome", "taxid": "2849669", "species_taxid": "2849669", "organism_name": "Nocardioides nematodiphilus", "infraspecific_name": "strain=R-N-C8", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/02", "asm_name": "ASM2021652v1", "asm_submitter": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan", "gbrs_paired_asm": "GCA_020216525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/216/525/GCF_020216525.1_ASM2021652v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3790319", "genome_size_ungapped": "3790269", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020216525.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3671", "protein_coding_gene_count": "3593", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-02", "dateModified": "2021-10-02", "datePublished": "2021-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides nematodiphilus" ], "sample_taxid": [ "2849669" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan" ], "sample_host_location_id": [], "data_size": "1.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3790319", "Number of Sequences": "28", "Longest Sequences (bp)": "636586", "N50 (bp)": "378105", "Gap Ratio (%)": "0.001319", "GCcontent (%)": "70.9", "Number of CDSs": "3626", "Average Protein Length": "325.3", "Coding Ratio (%)": "93.4", "Number of rRNAs": "4", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides nematodiphilus", "strain": "strain=R-N-C8", "accession": "GCA_020216525.1", "taxid": 2849669, "species_taxid": 2849669, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1251, "total_fragments": 1253, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides terrae", "strain": "strain=CGMCC 1.7056", "accession": "GCA_900112345.1", "taxid": 574651, "species_taxid": 574651, "relation_to_type": "type", "validated": true, "ani": 81.0012, "matched_fragments": 688, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides phosphati", "strain": "strain=CGMCC 4.7371", "accession": "GCA_014646375.1", "taxid": 1867775, "species_taxid": 1867775, "relation_to_type": "type", "validated": true, "ani": 80.6974, "matched_fragments": 519, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides daeguensis", "strain": "strain=2C1-5", "accession": "GCA_019192965.1", "taxid": 908359, "species_taxid": 908359, "relation_to_type": "type", "validated": true, "ani": 80.3916, "matched_fragments": 633, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 80.3888, "matched_fragments": 625, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 80.3514, "matched_fragments": 637, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.3312, "matched_fragments": 663, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luteus", "strain": "strain=JCM 3358", "accession": "GCA_014648595.1", "taxid": 1844, "species_taxid": 1844, "relation_to_type": "type", "validated": true, "ani": 80.2901, "matched_fragments": 647, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=NBRC 12069", "accession": "GCA_006538965.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 80.2499, "matched_fragments": 651, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides albidus", "strain": "strain=CCTCC AB 2015297", "accession": "GCA_006335005.1", "taxid": 1517589, "species_taxid": 1517589, "relation_to_type": "type", "validated": true, "ani": 80.2367, "matched_fragments": 597, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides aromaticivorans", "strain": "strain=DSM 15131", "accession": "GCA_013408525.1", "taxid": 200618, "species_taxid": 200618, "relation_to_type": "type", "validated": true, "ani": 80.2206, "matched_fragments": 666, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 80.2102, "matched_fragments": 641, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.1925, "matched_fragments": 666, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernaquae", "strain": "strain=K1W22B-1", "accession": "GCA_003600895.1", "taxid": 2321396, "species_taxid": 2321396, "relation_to_type": "type", "validated": true, "ani": 80.1919, "matched_fragments": 473, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panzhihuensis", "strain": "strain=DSM 26487", "accession": "GCA_013408335.1", "taxid": 860243, "species_taxid": 860243, "relation_to_type": "type", "validated": true, "ani": 80.1781, "matched_fragments": 605, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides albertanoniae", "strain": "strain=DSM 25218", "accession": "GCA_006716315.1", "taxid": 1175486, "species_taxid": 1175486, "relation_to_type": "type", "validated": true, "ani": 80.1544, "matched_fragments": 622, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides albus", "strain": "strain=JCM 3185", "accession": "GCA_014648255.1", "taxid": 1841, "species_taxid": 1841, "relation_to_type": "type", "validated": true, "ani": 80.1534, "matched_fragments": 610, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinus", "strain": "strain=DSM 18248", "accession": "GCA_013408145.1", "taxid": 374514, "species_taxid": 374514, "relation_to_type": "type", "validated": true, "ani": 80.1155, "matched_fragments": 614, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 80.0989, "matched_fragments": 653, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humi", "strain": "strain=DCY24", "accession": "GCA_006494775.1", "taxid": 449461, "species_taxid": 449461, "relation_to_type": "type", "validated": true, "ani": 80.0661, "matched_fragments": 659, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides caeni", "strain": "strain=DSM 23134", "accession": "GCA_004912195.1", "taxid": 574700, "species_taxid": 574700, "relation_to_type": "type", "validated": true, "ani": 79.9788, "matched_fragments": 575, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides carbamazepini", "strain": "strain=CBZ_1", "accession": "GCA_024614185.1", "taxid": 2854259, "species_taxid": 2854259, "relation_to_type": "type", "validated": true, "ani": 79.8948, "matched_fragments": 635, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 79.7489, "matched_fragments": 629, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 79.6863, "matched_fragments": 568, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 79.6235, "matched_fragments": 580, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.4819, "matched_fragments": 472, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 79.2833, "matched_fragments": 549, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000364605.1", "gtdb_species": "s__Nocardioides sp000364605", "ani": 82.9772, "matched_fragments": 833, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112345.1", "gtdb_species": "s__Nocardioides terrae", "ani": 81.0129, "matched_fragments": 687, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873835.1", "gtdb_species": "s__Nocardioides sp014873835", "ani": 80.6642, "matched_fragments": 711, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019192965.1", "gtdb_species": "s__Nocardioides daeguensis", "ani": 80.4289, "matched_fragments": 629, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013177455.1", "gtdb_species": "s__Nocardioides sp013177455", "ani": 80.4242, "matched_fragments": 644, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013466785.1", "gtdb_species": "s__Nocardioides marinisabuli", "ani": 80.3849, "matched_fragments": 625, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000960475.2", "gtdb_species": "s__Nocardioides luteus_A", "ani": 80.3676, "matched_fragments": 657, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409625.1", "gtdb_species": "s__Nocardioides kongjuensis", "ani": 80.3428, "matched_fragments": 674, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648595.1", "gtdb_species": "s__Nocardioides luteus", "ani": 80.3376, "matched_fragments": 642, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015752315.1", "gtdb_species": "s__Nocardioides sp000192415", "ani": 80.3321, "matched_fragments": 656, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000519005.1", "gtdb_species": "s__Nocardioides sp000519005", "ani": 80.2976, "matched_fragments": 632, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001627335.1", "gtdb_species": "s__Nocardioides sp001627335", "ani": 80.295, "matched_fragments": 534, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_018831735.1", "gtdb_species": "s__Nocardioides sp018831735", "ani": 80.2554, "matched_fragments": 677, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003054165.1", "gtdb_species": "s__Nocardioides sp003054165", "ani": 80.2533, "matched_fragments": 620, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873635.1", "gtdb_species": "s__Nocardioides sp014873635", "ani": 80.2397, "matched_fragments": 632, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408525.1", "gtdb_species": "s__Nocardioides aromaticivorans", "ani": 80.2255, "matched_fragments": 666, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900101465.1", "gtdb_species": "s__Nocardioides lianchengensis", "ani": 80.211, "matched_fragments": 663, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006715725.1", "gtdb_species": "s__Nocardioides sp006715725", "ani": 80.199, "matched_fragments": 669, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114845.1", "gtdb_species": "s__Nocardioides simplex", "ani": 80.1746, "matched_fragments": 645, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006716315.1", "gtdb_species": "s__Nocardioides albertanoniae", "ani": 80.1732, "matched_fragments": 620, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428825.1", "gtdb_species": "s__Nocardioides sp001428825", "ani": 80.1537, "matched_fragments": 653, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003600895.1", "gtdb_species": "s__Nocardioides sp003600895", "ani": 80.1486, "matched_fragments": 477, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009699265.1", "gtdb_species": "s__Nocardioides sp009699265", "ani": 80.0325, "matched_fragments": 533, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004912195.1", "gtdb_species": "s__Nocardioides caeni", "ani": 79.9946, "matched_fragments": 574, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001427795.1", "gtdb_species": "s__Nocardioides sp001427795", "ani": 79.7842, "matched_fragments": 567, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013624435.2", "gtdb_species": "s__Nocardioides sp013624415", "ani": 79.4815, "matched_fragments": 539, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "99.04", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015352455.1", "gtdb_species": "s__Nocardioides islandensis", "ani": 79.2583, "matched_fragments": 552, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.295, "cell_length": 0.117, "doubling_h": null, "growth_tmp": 27.661, "optimum_tmp": 28.172, "optimum_ph": 7.323, "genome_size": 4214904.166, "gc_content": 71.317, "coding_genes": 4058.0, "rRNA16S_genes": 3.0, "tRNA_genes": 48.0, "gram_stain": 1.0, "sporulation": 0.023, "motility": 0.217, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 0.893, "coccus_cell_shape": 0.021, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.085, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Nocardioides", "nematodiphilus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }