{ "type": "genome", "identifier": "GCF_020217425.1", "organism": "Halomicrobium urmianum", "title": "Halomicrobium urmianum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020217425.1", "bioproject": "PRJNA224116", "biosample": "SAMN21591356", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1586233", "species_taxid": "1586233", "organism_name": "Halomicrobium urmianum", "infraspecific_name": "strain=IBRC-M: 10911", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/03", "asm_name": "ASM2021742v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_020217425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/217/425/GCF_020217425.1_ASM2021742v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4254704", "genome_size_ungapped": "4254704", "gc_percent": "67.500000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020217425.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4307", "protein_coding_gene_count": "4142", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-03", "dateModified": "2021-10-03", "datePublished": "2021-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomicrobium urmianum" ], "sample_taxid": [ "1586233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Urmia salt lake" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.56, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4254704", "Number of Sequences": "6", "Longest Sequences (bp)": "3355004", "N50 (bp)": "3355004", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "4282", "Average Protein Length": "280.2", "Coding Ratio (%)": "84.6", "Number of rRNAs": "12", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomicrobium zhouii", "strain": "strain=CGMCC 1.10457", "accession": "GCA_900114435.1", "taxid": 767519, "species_taxid": 767519, "relation_to_type": "type", "validated": true, "ani": 80.5496, "matched_fragments": 679, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula salina", "strain": "strain=YGHS18", "accession": "GCA_010119195.1", "taxid": 1429914, "species_taxid": 1429914, "relation_to_type": "type", "validated": true, "ani": 80.1781, "matched_fragments": 608, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula salina", "strain": "strain=JCM 18369", "accession": "GCA_019061225.1", "taxid": 1429914, "species_taxid": 1429914, "relation_to_type": "type", "validated": true, "ani": 80.1386, "matched_fragments": 613, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula limicola", "strain": "strain=YGHS32", "accession": "GCA_010119205.1", "taxid": 1429915, "species_taxid": 1429915, "relation_to_type": "type", "validated": true, "ani": 79.9373, "matched_fragments": 605, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halosimplex halophilum", "strain": "strain=TH32", "accession": "GCA_004698125.1", "taxid": 2559572, "species_taxid": 2559572, "relation_to_type": "type", "validated": true, "ani": 79.763, "matched_fragments": 652, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula rubra", "strain": "strain=F13", "accession": "GCA_019599465.1", "taxid": 2487747, "species_taxid": 2487747, "relation_to_type": "type", "validated": true, "ani": 79.7433, "matched_fragments": 625, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halosimplex rubrum", "strain": "strain=R27", "accession": "GCA_013415885.1", "taxid": 869889, "species_taxid": 869889, "relation_to_type": "type", "validated": true, "ani": 79.6111, "matched_fragments": 662, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halosimplex pelagicum", "strain": "strain=R2", "accession": "GCA_013415905.1", "taxid": 869886, "species_taxid": 869886, "relation_to_type": "type", "validated": true, "ani": 79.6074, "matched_fragments": 657, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula pellucida", "strain": "strain=CECT 7537", "accession": "GCA_019599515.1", "taxid": 1427151, "species_taxid": 1427151, "relation_to_type": "type", "validated": true, "ani": 79.383, "matched_fragments": 565, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halosimplex litoreum", "strain": "strain=YGH94", "accession": "GCA_016065055.1", "taxid": 1198301, "species_taxid": 1198301, "relation_to_type": "type", "validated": true, "ani": 79.3646, "matched_fragments": 601, "total_fragments": 1416, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula pellucida", "strain": "strain=JCM 17820", "accession": "GCA_014647235.1", "taxid": 1427151, 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1, "status": "-" }, { "accession": "GCF_010119195.1", "gtdb_species": "s__Haloarcula salina", "ani": 80.2016, "matched_fragments": 605, "total_fragments": 1416, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Haloarcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010119205.1", "gtdb_species": "s__Halomicroarcula limicola", "ani": 79.9573, "matched_fragments": 603, "total_fragments": 1416, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomicroarcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": 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