{ "type": "genome", "identifier": "GCF_020387415.1", "organism": "Ideonella benzenivorans", "title": "Ideonella benzenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunagrian University of Agriculture and Life Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020387415.1", "bioproject": "PRJNA224116", "biosample": "SAMN18092163", "wgs_master": "JAGWCB000000000.1", "refseq_category": "reference genome", "taxid": "2831643", "species_taxid": "2831643", "organism_name": "Ideonella benzenivorans", "infraspecific_name": "strain=B7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/08", "asm_name": "ASM2038741v1", "asm_submitter": "Hunagrian University of Agriculture and Life Sciences", "gbrs_paired_asm": "GCA_020387415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/387/415/GCF_020387415.1_ASM2038741v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4490200", "genome_size_ungapped": "4490100", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020387415.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4167", "protein_coding_gene_count": "4066", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-08", "dateModified": "2021-10-08", "datePublished": "2021-10-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella benzenivorans" ], "sample_taxid": [ "2831643" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary: BTEX contaminated site in Siklos" ], "sample_host_location_id": [], "data_size": "1.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4490200", "Number of Sequences": "21", "Longest Sequences (bp)": "792480", "N50 (bp)": "545182", "Gap Ratio (%)": "0.002227", "GCcontent (%)": "68.8", "Number of CDSs": "4106", "Average Protein Length": "336.0", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus rhododendri", "strain": "strain=KACC 21265", "accession": "GCA_009906855.1", "taxid": 2697032, "species_taxid": 2697032, "relation_to_type": "type", "validated": true, "ani": 78.9163, "matched_fragments": 598, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 75.4474, "matched_fragments": 179, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008801845.1", "gtdb_species": "s__Ideonella dechloratans", "ani": 88.4731, "matched_fragments": 1104, "total_fragments": 1487, "gtdb_taxonomy": 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