{
    "type": "genome",
    "identifier": "GCF_020424085.1",
    "organism": "Mycetocola spongiae",
    "title": "Mycetocola spongiae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Jiao Tong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020424085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20206181",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2859226",
        "species_taxid": "2859226",
        "organism_name": "Mycetocola spongiae",
        "infraspecific_name": "strain=MSC19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/12",
        "asm_name": "ASM2042408v1",
        "asm_submitter": "Shanghai Jiao Tong University",
        "gbrs_paired_asm": "GCA_020424085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/424/085/GCF_020424085.1_ASM2042408v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3196754",
        "genome_size_ungapped": "3196754",
        "gc_percent": "66.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020424085.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "2937",
        "protein_coding_gene_count": "2853",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-12",
    "dateModified": "2021-10-12",
    "datePublished": "2021-10-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycetocola spongiae"
        ],
        "sample_taxid": [
            "2859226"
        ],
        "sample_host_organism": [
            "Cacospongia mycofijiensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.877 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3196754",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3196754",
        "N50 (bp)": "3196754",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.4",
        "Number of CDSs": "2925",
        "Average Protein Length": "328.2",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "13",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycetocola spongiae",
                "strain": "strain=MSC19",
                "accession": "GCA_020424085.1",
                "taxid": 2859226,
                "species_taxid": 2859226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1064,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycetocola saprophilus",
                "strain": "strain=NRRL B-24119",
                "accession": "GCA_000718085.1",
                "taxid": 76636,
                "species_taxid": 76636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1353,
                "matched_fragments": 456,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycetocola lacteus",
                "strain": "strain=JCM 11654",
                "accession": "GCA_003667575.1",
                "taxid": 76637,
                "species_taxid": 76637,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9084,
                "matched_fragments": 451,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microterricola viridarii",
                "strain": "strain=DSM 21772",
                "accession": "GCA_900104895.1",
                "taxid": 412690,
                "species_taxid": 412690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0635,
                "matched_fragments": 258,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium soli",
                "strain": "strain=GCJ02",
                "accession": "GCA_003611035.1",
                "taxid": 2220095,
                "species_taxid": 2220095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8672,
                "matched_fragments": 237,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Okibacterium fritillariae",
                "strain": "strain=VKM Ac-2059",
                "accession": "GCA_900167575.1",
                "taxid": 123320,
                "species_taxid": 123320,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8447,
                "matched_fragments": 218,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microterricola gilva",
                "strain": "strain=DSM 18319",
                "accession": "GCA_004217495.1",
                "taxid": 393267,
                "species_taxid": 393267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7964,
                "matched_fragments": 214,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microterricola pindariensis",
                "strain": "strain=PON 10",
                "accession": "GCA_002936985.1",
                "taxid": 478010,
                "species_taxid": 478010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7873,
                "matched_fragments": 246,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Herbiconiux flava",
                "strain": "strain=DSM 26474",
                "accession": "GCA_013409865.1",
                "taxid": 881268,
                "species_taxid": 881268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7059,
                "matched_fragments": 223,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium humi",
                "strain": "strain=DSM 21799",
                "accession": "GCA_900105715.1",
                "taxid": 640635,
                "species_taxid": 640635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6507,
                "matched_fragments": 160,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium arcticum",
                "strain": "strain=SK-1",
                "accession": "GCA_003185895.1",
                "taxid": 670052,
                "species_taxid": 670052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4903,
                "matched_fragments": 218,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium breve",
                "strain": "strain=TMT4-23",
                "accession": "GCA_004402375.1",
                "taxid": 1259258,
                "species_taxid": 1259258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3491,
                "matched_fragments": 155,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2942,
                "matched_fragments": 204,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces agglutinans",
                "strain": "strain=CFH 90414",
                "accession": "GCA_009647605.1",
                "taxid": 2662258,
                "species_taxid": 2662258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2481,
                "matched_fragments": 177,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cavernae",
                "strain": "strain=SYSU K20354",
                "accession": "GCA_021044935.1",
                "taxid": 2898659,
                "species_taxid": 2898659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1259,
                "matched_fragments": 175,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces luteolus",
                "strain": "strain=JCM 11431",
                "accession": "GCA_009729855.1",
                "taxid": 88373,
                "species_taxid": 88373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8991,
                "matched_fragments": 183,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces bracchium",
                "strain": "strain=JCM 11433",
                "accession": "GCA_009709675.1",
                "taxid": 88376,
                "species_taxid": 88376,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8916,
                "matched_fragments": 188,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000718085.1",
                "gtdb_species": "s__Mycetocola saprophilus",
                "ani": 80.1353,
                "matched_fragments": 456,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Mycetocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003667575.1",
                "gtdb_species": "s__Mycetocola lacteus",
                "ani": 79.897,
                "matched_fragments": 452,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Mycetocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003667565.1",
                "gtdb_species": "s__Mycetocola tolaasinivorans",
                "ani": 79.5931,
                "matched_fragments": 433,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Mycetocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104895.1",
                "gtdb_species": "s__Microterricola viridarii",
                "ani": 78.0941,
                "matched_fragments": 259,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microterricola",
                "ani_circumscription_radius": 96.4039,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900167575.1",
                "gtdb_species": "s__Okibacterium fritillariae",
                "ani": 77.8293,
                "matched_fragments": 219,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Okibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002936985.1",
                "gtdb_species": "s__Microterricola pindariensis",
                "ani": 77.7862,
                "matched_fragments": 246,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microterricola",
                "ani_circumscription_radius": 96.4039,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003014675.1",
                "gtdb_species": "s__Labedella gwakjiensis",
                "ani": 77.7522,
                "matched_fragments": 168,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Labedella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900105715.1",
                "gtdb_species": "s__Microbacterium_A humi",
                "ani": 77.6837,
                "matched_fragments": 161,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610585.1",
                "gtdb_species": "s__Microterricola sp003610585",
                "ani": 77.6431,
                "matched_fragments": 206,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microterricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004403065.1",
                "gtdb_species": "s__Cryobacterium sp004403065",
                "ani": 77.5859,
                "matched_fragments": 179,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002929845.1",
                "gtdb_species": "s__Cryobacterium sp002929845",
                "ani": 77.5837,
                "matched_fragments": 162,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_900142065.1",
                "gtdb_species": "s__Agromyces cerinus",
                "ani": 77.3676,
                "matched_fragments": 173,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008122505.1",
                "gtdb_species": "s__Agromyces sp008122505",
                "ani": 77.2782,
                "matched_fragments": 206,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002797855.1",
                "gtdb_species": "s__Compostimonas suwonensis",
                "ani": 77.2121,
                "matched_fragments": 186,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Compostimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001429165.1",
                "gtdb_species": "s__Agromyces sp001429165",
                "ani": 77.1652,
                "matched_fragments": 192,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004216665.1",
                "gtdb_species": "s__Agromyces ramosus",
                "ani": 77.0337,
                "matched_fragments": 176,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009709675.1",
                "gtdb_species": "s__Agromyces bracchium",
                "ani": 76.8786,
                "matched_fragments": 189,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009729855.1",
                "gtdb_species": "s__Agromyces luteolus",
                "ani": 76.8725,
                "matched_fragments": 185,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.465,
        "cell_length": -0.201,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 25.625,
        "optimum_ph": 7.5,
        "genome_size": 3375841.75,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mycetocola",
        "spongiae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}