{ "type": "genome", "identifier": "GCF_020447265.1", "organism": "Hymenobacter lucidus", "title": "Hymenobacter lucidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020447265.1", "bioproject": "PRJNA224116", "biosample": "SAMN22071812", "wgs_master": "JAJADR000000000.1", "refseq_category": "reference genome", "taxid": "2880930", "species_taxid": "2880930", "organism_name": "Hymenobacter lucidus", "infraspecific_name": "strain=BT178", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044726v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_020447265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/447/265/GCF_020447265.1_ASM2044726v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5944993", "genome_size_ungapped": "5944993", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020447265.1-RS_2024_06_03", "annotation_date": "2024-06-03", "total_gene_count": "4945", "protein_coding_gene_count": "4884", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter lucidus" ], "sample_taxid": [ "2880930" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Uijeongbu" ], "sample_host_location_id": [], "data_size": "1.671 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5944993", "Number of Sequences": "23", "Longest Sequences (bp)": "1633263", "N50 (bp)": "672314", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "4946", "Average Protein Length": "345.1", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 85.8285, "matched_fragments": 1403, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 85.2172, "matched_fragments": 1428, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 84.2846, "matched_fragments": 1385, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter elongatus", "strain": "strain=JCM 17223", "accession": "GCA_004745955.1", "taxid": 877208, "species_taxid": 877208, "relation_to_type": "type", "validated": true, "ani": 83.2327, "matched_fragments": 1129, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 82.6699, "matched_fragments": 1119, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 82.3531, "matched_fragments": 1017, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 80.8336, "matched_fragments": 931, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.4528, "matched_fragments": 939, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 80.1575, "matched_fragments": 950, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 80.0582, "matched_fragments": 957, "total_fragments": 1971, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hymenobacter", "lucidus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }