{ "type": "genome", "identifier": "GCF_020447315.1", "organism": "Hymenobacter nitidus", "title": "Hymenobacter nitidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020447315.1", "bioproject": "PRJNA224116", "biosample": "SAMN22070957", "wgs_master": "JAJADQ000000000.1", "refseq_category": "reference genome", "taxid": "2880929", "species_taxid": "2880929", "organism_name": "Hymenobacter nitidus", "infraspecific_name": "strain=BT635", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/13", "asm_name": "ASM2044731v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_020447315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/447/315/GCF_020447315.1_ASM2044731v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5546134", "genome_size_ungapped": "5546134", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020447315.1-RS_2024_06_03", "annotation_date": "2024-06-03", "total_gene_count": "4695", "protein_coding_gene_count": "4633", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-13", "dateModified": "2021-10-13", "datePublished": "2021-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter nitidus" ], "sample_taxid": [ "2880929" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gwangju-si" ], "sample_host_location_id": [], "data_size": "1.555 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5546134", "Number of Sequences": "33", "Longest Sequences (bp)": "782908", "N50 (bp)": "400859", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "4650", "Average Protein Length": "342.2", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 87.4446, "matched_fragments": 1426, "total_fragments": 1833, "ani_threshold": 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"organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 82.8077, "matched_fragments": 1073, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 82.2585, "matched_fragments": 1012, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 80.9623, "matched_fragments": 963, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.5862, "matched_fragments": 943, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 80.5399, "matched_fragments": 905, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 80.5271, "matched_fragments": 920, "total_fragments": 1833, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745645.1", "gtdb_species": "s__Hymenobacter sp004745645", "ani": 85.2512, "matched_fragments": 1383, "total_fragments": 1833, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745955.1", "gtdb_species": "s__Hymenobacter elongatus", "ani": 83.2165, "matched_fragments": 1141, "total_fragments": 1833, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, 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