{
    "type": "genome",
    "identifier": "GCF_020523925.1",
    "organism": "Tamlana laminarinivorans",
    "title": "Tamlana laminarinivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shantou University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020523925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN22209137",
        "wgs_master": "JAJAPW000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2883124",
        "species_taxid": "2883124",
        "organism_name": "Tamlana laminarinivorans",
        "infraspecific_name": "strain=PT2-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/18",
        "asm_name": "ASM2052392v1",
        "asm_submitter": "Shantou University",
        "gbrs_paired_asm": "GCA_020523925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/523/925/GCF_020523925.1_ASM2052392v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3621748",
        "genome_size_ungapped": "3621748",
        "gc_percent": "32.000000",
        "replicon_count": "0",
        "scaffold_count": "125",
        "contig_count": "125",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020523925.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3252",
        "protein_coding_gene_count": "3168",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-18",
    "dateModified": "2021-10-18",
    "datePublished": "2021-10-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tamlana laminarinivorans"
        ],
        "sample_taxid": [
            "2883124"
        ],
        "sample_host_organism": [
            "brown alga"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Pingtan Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.003 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3621748",
        "Number of Sequences": "125",
        "Longest Sequences (bp)": "897596",
        "N50 (bp)": "600916",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.1",
        "Number of CDSs": "3132",
        "Average Protein Length": "345.5",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tamlana sedimentorum",
                "strain": "strain=JCM 19808",
                "accession": "GCA_000943565.1",
                "taxid": 1435349,
                "species_taxid": 1435349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5995,
                "matched_fragments": 850,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana nanhaiensis",
                "strain": "strain=FHC16",
                "accession": "GCA_000943555.1",
                "taxid": 1382798,
                "species_taxid": 1382798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7419,
                "matched_fragments": 705,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seonamhaeicola algicola",
                "strain": "strain=Gy8",
                "accession": "GCA_007997385.1",
                "taxid": 1719036,
                "species_taxid": 1719036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0778,
                "matched_fragments": 491,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pacificus",
                "strain": "strain=H164",
                "accession": "GCA_008033385.1",
                "taxid": 2599389,
                "species_taxid": 2599389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7286,
                "matched_fragments": 413,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=DSM 29199",
                "accession": "GCA_014202225.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4791,
                "matched_fragments": 494,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=RU-4-M-4",
                "accession": "GCA_007559325.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4777,
                "matched_fragments": 499,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter amylolyticus",
                "strain": "strain=RU-4-M-4",
                "accession": "GCA_008630605.1",
                "taxid": 1608400,
                "species_taxid": 1608400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4748,
                "matched_fragments": 500,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenitalea lutea",
                "strain": "strain=CGMCC 1.12213",
                "accession": "GCA_900141715.1",
                "taxid": 1178825,
                "species_taxid": 1178825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0076,
                "matched_fragments": 449,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana carrageenivorans",
                "strain": "strain=UJ94",
                "accession": "GCA_002893765.1",
                "taxid": 2069432,
                "species_taxid": 2069432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9968,
                "matched_fragments": 341,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana agarivorans",
                "strain": "strain=JW-26",
                "accession": "GCA_001642835.1",
                "taxid": 481183,
                "species_taxid": 481183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9309,
                "matched_fragments": 352,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenitalea lutea",
                "strain": "strain=P7-3-5",
                "accession": "GCA_000283015.1",
                "taxid": 1178825,
                "species_taxid": 1178825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9228,
                "matched_fragments": 452,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana haliotis",
                "strain": "strain=B1N29",
                "accession": "GCA_008806375.1",
                "taxid": 2614804,
                "species_taxid": 2614804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.92,
                "matched_fragments": 318,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavivirga rizhaonensis",
                "strain": "strain=RZ03",
                "accession": "GCA_004791695.1",
                "taxid": 2559571,
                "species_taxid": 2559571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8068,
                "matched_fragments": 359,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seonamhaeicola maritimus",
                "strain": "strain=1505",
                "accession": "GCA_008056315.1",
                "taxid": 2591822,
                "species_taxid": 2591822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6931,
                "matched_fragments": 346,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera flava",
                "strain": "strain=NBU2984",
                "accession": "GCA_023634025.1",
                "taxid": 2930218,
                "species_taxid": 2930218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5248,
                "matched_fragments": 243,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariivivens insulae",
                "strain": "strain=AH-MY3",
                "accession": "GCA_022662195.1",
                "taxid": 1621988,
                "species_taxid": 1621988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4435,
                "matched_fragments": 284,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella flava",
                "strain": "strain=T58",
                "accession": "GCA_004310325.1",
                "taxid": 2527939,
                "species_taxid": 2527939,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3649,
                "matched_fragments": 293,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera marina",
                "strain": "strain=NBU2968",
                "accession": "GCA_019880635.1",
                "taxid": 2873265,
                "species_taxid": 2873265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3345,
                "matched_fragments": 226,
                "total_fragments": 1186,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000943565.1",
                "gtdb_species": "s__Tamlana_B sedimentorum",
                "ani": 88.6157,
                "matched_fragments": 849,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000943555.1",
                "gtdb_species": "s__Tamlana_B nanhaiensis",
                "ani": 81.7534,
                "matched_fragments": 704,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007997385.1",
                "gtdb_species": "s__Seonamhaeicola algicola",
                "ani": 79.079,
                "matched_fragments": 491,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000789235.1",
                "gtdb_species": "s__Wocania ichthyoenteri",
                "ani": 78.7618,
                "matched_fragments": 446,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wocania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001971785.1",
                "gtdb_species": "s__Seonamhaeicola sp001971785",
                "ani": 78.5119,
                "matched_fragments": 437,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014202225.1",
                "gtdb_species": "s__Algibacter_B amylolyticus",
                "ani": 78.4929,
                "matched_fragments": 490,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900112595.1",
                "gtdb_species": "s__Algibacter_B pectinivorans",
                "ani": 78.4869,
                "matched_fragments": 493,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860245.1",
                "gtdb_species": "s__Tamlana_A agarivorans_A",
                "ani": 78.445,
                "matched_fragments": 363,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000941055.1",
                "gtdb_species": "s__Siansivirga zeaxanthinifaciens",
                "ani": 78.3718,
                "matched_fragments": 382,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Siansivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003143755.1",
                "gtdb_species": "s__Algibacter_B sp003143755",
                "ani": 78.2755,
                "matched_fragments": 431,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015355625.1",
                "gtdb_species": "s__Tamlana_A sp015355625",
                "ani": 78.1785,
                "matched_fragments": 389,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009796825.1",
                "gtdb_species": "s__Algibacter sp009796825",
                "ani": 78.1706,
                "matched_fragments": 451,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900112395.1",
                "gtdb_species": "s__Algibacter lectus",
                "ani": 78.1531,
                "matched_fragments": 463,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_009796805.1",
                "gtdb_species": "s__Algibacter sp009796805",
                "ani": 78.1232,
                "matched_fragments": 472,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900141715.1",
                "gtdb_species": "s__Arenitalea lutea",
                "ani": 78.005,
                "matched_fragments": 448,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001642835.1",
                "gtdb_species": "s__Tamlana_A agarivorans",
                "ani": 77.9218,
                "matched_fragments": 353,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
                "min_intra_species_ani": "95.44",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004366715.1",
                "gtdb_species": "s__Meridianimaribacter flavus",
                "ani": 77.8282,
                "matched_fragments": 303,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007827365.1",
                "gtdb_species": "s__Olleya sp002323495",
                "ani": 77.4385,
                "matched_fragments": 269,
                "total_fragments": 1186,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Olleya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": -0.023,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 28.75,
        "optimum_ph": 7.1,
        "genome_size": 3938145.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Tamlana",
        "laminarinivorans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}