{ "type": "genome", "identifier": "GCF_020525685.1", "organism": "Klebsiella quasipneumoniae subsp. similipneumoniae", "title": "Klebsiella quasipneumoniae subsp. similipneumoniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020525685.1", "bioproject": "PRJNA224116", "biosample": "SAMN22024805", "wgs_master": "na", "refseq_category": "na", "taxid": "1463164", "species_taxid": "1463165", "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "infraspecific_name": "strain=07A044T", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2052568v1", "asm_submitter": "Monash University", "gbrs_paired_asm": "GCA_020525685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/525/685/GCF_020525685.1_ASM2052568v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5189735", "genome_size_ungapped": "5189635", "gc_percent": "58.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-28", "total_gene_count": "5033", "protein_coding_gene_count": "4812", "non_coding_gene_count": "121", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella quasipneumoniae subsp. similipneumoniae" ], "sample_taxid": [ "1463164" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.458 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5189735", "Number of Sequences": "2", "Longest Sequences (bp)": "5084979", "N50 (bp)": "5084979", "Gap Ratio (%)": "0.001927", "GCcontent (%)": "58.1", "Number of CDSs": "4821", "Average Protein Length": "315.2", "Coding Ratio (%)": "87.8", "Number of rRNAs": "25", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella quasipneumoniae subsp. similipneumoniae", "strain": "strain=07A044T", 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"accession": "GCA_020099175.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 96.6, "matched_fragments": 1614, "total_fragments": 1728, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella quasipneumoniae", "strain": "strain=DSM 28211", "accession": "GCA_020115515.1", "taxid": 1463165, "species_taxid": 1463165, "relation_to_type": "type", "validated": true, "ani": 96.5308, "matched_fragments": 1585, "total_fragments": 1728, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 93.9931, "matched_fragments": 1535, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 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"relation_to_type": "type", "validated": true, "ani": 81.6481, "matched_fragments": 916, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.44, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000751755.1", "gtdb_species": "s__Klebsiella quasipneumoniae", "ani": 96.5738, "matched_fragments": 1574, "total_fragments": 1728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "95.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 644, "status": "conclusive" }, { "accession": "GCF_000742135.1", "gtdb_species": "s__Klebsiella pneumoniae", "ani": 93.9915, "matched_fragments": 1544, "total_fragments": 1728, "gtdb_taxonomy": 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