{ "type": "genome", "identifier": "GCF_020531945.1", "organism": "Loktanella gaetbuli", "title": "Loktanella gaetbuli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020531945.1", "bioproject": "PRJNA224116", "biosample": "SAMN22105853", "wgs_master": "JAJATZ000000000.1", "refseq_category": "reference genome", "taxid": "2881335", "species_taxid": "2881335", "organism_name": "Loktanella gaetbuli", "infraspecific_name": "strain=TSTF-M6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2053194v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_020531945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/531/945/GCF_020531945.1_ASM2053194v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3360688", "genome_size_ungapped": "3360688", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020531945.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3330", "protein_coding_gene_count": "3251", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Loktanella gaetbuli" ], "sample_taxid": [ "2881335" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Taean" ], "sample_host_location_id": [], "data_size": "0.934 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3360688", "Number of Sequences": "21", "Longest Sequences (bp)": "725450", "N50 (bp)": "565456", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "3285", "Average Protein Length": "312.3", "Coding Ratio (%)": "91.6", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Loktanella fryxellensis", "strain": "strain=DSM 16213", "accession": "GCA_900110065.1", "taxid": 245187, "species_taxid": 245187, "relation_to_type": "type", "validated": true, "ani": 79.3184, "matched_fragments": 533, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 79.1908, "matched_fragments": 520, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella salsilacus", "strain": "strain=DSM 16199", "accession": "GCA_900114485.1", "taxid": 195913, "species_taxid": 195913, "relation_to_type": "type", "validated": true, "ani": 78.7292, "matched_fragments": 501, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia vestfoldensis", "strain": "strain=DSM 16212", "accession": "GCA_000382265.1", "taxid": 245188, "species_taxid": 245188, "relation_to_type": "type", "validated": true, "ani": 78.4797, "matched_fragments": 415, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimaricola marinus", "strain": "strain=CECT 8899", "accession": "GCA_900184895.1", "taxid": 1819565, "species_taxid": 1819565, "relation_to_type": "type", "validated": true, "ani": 77.7028, "matched_fragments": 297, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.7025, "matched_fragments": 290, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia rosea", "strain": "strain=DSM 29591", "accession": "GCA_900156505.1", "taxid": 287098, "species_taxid": 287098, "relation_to_type": "type", "validated": true, "ani": 77.6826, "matched_fragments": 295, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.556, "matched_fragments": 306, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.5424, "matched_fragments": 285, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4503, "matched_fragments": 308, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.4108, "matched_fragments": 253, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.2804, "matched_fragments": 241, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 77.2729, "matched_fragments": 265, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 77.2315, "matched_fragments": 283, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.2151, "matched_fragments": 256, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.2042, "matched_fragments": 257, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.1855, "matched_fragments": 254, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium antarcticum", "strain": "strain=HQ09", "accession": "GCA_014899185.1", "taxid": 2613965, "species_taxid": 2613965, "relation_to_type": "type", "validated": true, "ani": 77.0906, "matched_fragments": 261, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sagittula marina", "strain": "strain=DSM 102235", "accession": "GCA_014196795.1", "taxid": 943940, "species_taxid": 943940, "relation_to_type": "type", "validated": true, "ani": 76.9951, "matched_fragments": 238, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 76.9796, "matched_fragments": 251, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.9618, "matched_fragments": 260, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.9489, "matched_fragments": 256, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.9472, "matched_fragments": 258, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { 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93.744, "matched_fragments": 988, "total_fragments": 1110, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Loktanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018263905.1", "gtdb_species": "s__Loktanella sp018263905", "ani": 81.1879, "matched_fragments": 689, "total_fragments": 1110, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Loktanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004145405.1", "gtdb_species": "s__Loktanella sp004145405", "ani": 79.3662, "matched_fragments": 538, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Loktanella", "gaetbuli" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }