{ "type": "genome", "identifier": "GCF_020531965.1", "organism": "Neorhizobium xiangyangii", "title": "Neorhizobium xiangyangii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020531965.1", "bioproject": "PRJNA224116", "biosample": "SAMN22170872", "wgs_master": "JAJAWH000000000.1", "refseq_category": "reference genome", "taxid": "2883104", "species_taxid": "2883104", "organism_name": "Neorhizobium xiangyangii", "infraspecific_name": "strain=T786", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2053196v1", "asm_submitter": "Hunan Agricultural University", "gbrs_paired_asm": "GCA_020531965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/531/965/GCF_020531965.1_ASM2053196v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5012858", "genome_size_ungapped": "5012858", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020531965.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4909", "protein_coding_gene_count": "4752", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Neorhizobium xiangyangii" ], "sample_taxid": [ "2883104" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Tibet Autonomous Region, Qamdo City, Banbar County" ], "sample_host_location_id": [], "data_size": "1.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5012858", "Number of Sequences": "126", "Longest Sequences (bp)": "296020", "N50 (bp)": "169022", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "4864", "Average Protein Length": "296.3", "Coding Ratio (%)": "86.2", "Number of rRNAs": "5", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhizobium endolithicum", "strain": "strain=JC140", "accession": "GCA_902153245.3", "taxid": 1191678, "species_taxid": 1191678, "relation_to_type": "type", "validated": true, "ani": 81.0144, "matched_fragments": 807, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium halotolerans", "strain": "strain=AB21", "accession": "GCA_902153235.3", "taxid": 1233081, "species_taxid": 1233081, "relation_to_type": "type", "validated": true, "ani": 80.6744, "matched_fragments": 745, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium banfieldiae", "strain": "strain=NT-26", "accession": "GCA_000967425.1", "taxid": 1125847, "species_taxid": 1125847, "relation_to_type": "type", "validated": true, "ani": 80.6053, "matched_fragments": 743, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=DSM 102134", "accession": "GCA_014201495.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 80.5261, "matched_fragments": 734, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_902502825.2", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 80.4896, "matched_fragments": 738, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhizobium flavum", "strain": "strain=YW14", "accession": "GCA_002000045.1", "taxid": 1335061, "species_taxid": 1335061, "relation_to_type": "type", "validated": true, "ani": 80.4484, "matched_fragments": 737, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 80.0218, "matched_fragments": 744, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium galegae", "strain": "strain=HAMBI 540", "accession": "GCA_000731315.1", "taxid": 399, "species_taxid": 399, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9472, "matched_fragments": 718, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 79.6415, "matched_fragments": 662, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 79.4788, "matched_fragments": 488, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 79.4103, "matched_fragments": 509, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pseudoryzae", "strain": "strain=DSM 19479", "accession": "GCA_011046245.1", "taxid": 379684, "species_taxid": 379684, "relation_to_type": "type", "validated": true, "ani": 79.3177, "matched_fragments": 616, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 79.2181, "matched_fragments": 635, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 79.176, "matched_fragments": 600, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 79.1472, "matched_fragments": 536, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella curvata", "strain": "strain=C3", "accession": "GCA_022899935.1", "taxid": 1817964, "species_taxid": 1817964, "relation_to_type": "type", "validated": true, "ani": 79.0373, "matched_fragments": 537, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium ruizarguesonis", "strain": "strain=UPM1133", "accession": "GCA_012349115.1", "taxid": 2081791, "species_taxid": 2081791, "relation_to_type": "type", "validated": true, "ani": 79.0272, "matched_fragments": 544, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 79.0089, "matched_fragments": 525, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium vallis", "strain": "strain=CCBAU 65647", "accession": "GCA_003985155.1", "taxid": 634290, "species_taxid": 634290, "relation_to_type": "type", "validated": true, "ani": 78.9572, "matched_fragments": 536, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=USDA 2370", "accession": "GCA_002008365.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9176, "matched_fragments": 543, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=USDA 2370", "accession": "GCA_003058385.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8991, "matched_fragments": 555, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium leguminosarum", "strain": "strain=DSM 106839", "accession": "GCA_014202125.1", "taxid": 384, "species_taxid": 384, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8924, "matched_fragments": 552, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hainanense", "strain": "strain=CCBAU 57015", "accession": "GCA_900094555.1", "taxid": 52131, "species_taxid": 52131, "relation_to_type": "type", "validated": true, "ani": 78.8923, "matched_fragments": 498, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 78.8511, "matched_fragments": 524, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 78.8485, "matched_fragments": 548, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium indigoferae", "strain": "strain=CCBAU 71042", "accession": "GCA_013087605.1", "taxid": 158891, "species_taxid": 158891, "relation_to_type": "type", "validated": true, "ani": 78.8314, "matched_fragments": 548, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902153245.2", "gtdb_species": "s__Pseudorhizobium endolithicum", "ani": 81.0114, "matched_fragments": 807, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000722615.1", "gtdb_species": "s__Pseudorhizobium pelagicum", "ani": 81.0042, "matched_fragments": 805, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_902502825.2", "gtdb_species": "s__Pseudorhizobium flavum", "ani": 80.5026, "matched_fragments": 736, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.77", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_000985875.1", "gtdb_species": "s__Neorhizobium galegae_C", "ani": 80.0746, "matched_fragments": 745, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_017877055.1", "gtdb_species": "s__Neorhizobium galegae_D", "ani": 80.0711, "matched_fragments": 726, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000282095.2", "gtdb_species": "s__Neorhizobium sp000282095", "ani": 80.0266, "matched_fragments": 745, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000732195.1", "gtdb_species": "s__Neorhizobium vignae", "ani": 80.0026, "matched_fragments": 747, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001005825.1", "gtdb_species": "s__Neorhizobium sp001005825", "ani": 79.9718, "matched_fragments": 745, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900111905.1", "gtdb_species": "s__Neorhizobium sp900111905", "ani": 79.8312, "matched_fragments": 685, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002968635.1", "gtdb_species": "s__Neorhizobium alkalisoli", "ani": 79.6447, "matched_fragments": 660, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007004135.1", "gtdb_species": "s__Rhizobium_A straminoryzae", "ani": 79.6206, "matched_fragments": 557, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900469955.1", "gtdb_species": "s__Neorhizobium sp900469955", "ani": 79.4801, "matched_fragments": 660, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009826855.1", "gtdb_species": "s__Shinella zoogloeoides", "ani": 79.4524, "matched_fragments": 491, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003574625.1", "gtdb_species": "s__Shinella zoogloeoides_A", "ani": 79.3905, "matched_fragments": 539, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018760785.1", "gtdb_species": "s__Rhizobium_A sp018760785", "ani": 79.3773, "matched_fragments": 601, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004343585.1", "gtdb_species": "s__Neorhizobium sp004343585", "ani": 79.3515, "matched_fragments": 620, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016839145.1", "gtdb_species": "s__Shinella sp016839145", "ani": 79.3196, "matched_fragments": 551, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011046245.1", "gtdb_species": "s__Rhizobium_A pseudoryzae", "ani": 79.3044, "matched_fragments": 618, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014195095.1", "gtdb_species": "s__Rhizobium sp014195095", "ani": 79.0532, "matched_fragments": 550, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012349115.1", "gtdb_species": "s__Rhizobium ruizarguesonis", "ani": 79.0349, "matched_fragments": 544, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 170, "status": "-" }, { "accession": "GCA_900470805.1", "gtdb_species": "s__Rhizobium sp900470805", "ani": 78.9563, "matched_fragments": 510, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009498525.1", "gtdb_species": "s__Rhizobium sp009498525", "ani": 78.881, "matched_fragments": 516, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345245.1", "gtdb_species": "s__Rhizobium sp004345245", "ani": 78.8804, "matched_fragments": 511, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002007205.1", "gtdb_species": "s__Ensifer adhaerens_D", "ani": 78.8798, "matched_fragments": 542, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 27.833, "optimum_tmp": 29.0, "optimum_ph": 7.0, "genome_size": 6401216.8, "gc_content": 61.253, "coding_genes": 6089.6, "rRNA16S_genes": 3.0, "tRNA_genes": 50.667, "gram_stain": 0.0, "sporulation": 0.5, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Neorhizobium", "xiangyangii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }