{ "type": "genome", "identifier": "GCF_020532555.1", "organism": "Microvirga lenta", "title": "Microvirga lenta", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020532555.1", "bioproject": "PRJNA224116", "biosample": "SAMN22106566", "wgs_master": "JAJBBR000000000.1", "refseq_category": "reference genome", "taxid": "2881337", "species_taxid": "2881337", "organism_name": "Microvirga lenta", "infraspecific_name": "strain=SM9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2053255v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_020532555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/532/555/GCF_020532555.1_ASM2053255v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4504751", "genome_size_ungapped": "4504751", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020532555.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4335", "protein_coding_gene_count": "4247", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga lenta" ], "sample_taxid": [ "2881337" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Taklimakan desert" ], "sample_host_location_id": [], "data_size": "1.247 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4504751", "Number of Sequences": "33", "Longest Sequences (bp)": "584181", "N50 (bp)": "422410", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "4317", "Average Protein Length": "304.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1484, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 84.6488, "matched_fragments": 1012, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 83.0179, "matched_fragments": 897, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 82.837, "matched_fragments": 777, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 82.7961, "matched_fragments": 874, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=DSM 21344", "accession": "GCA_003332305.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 82.6555, "matched_fragments": 844, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=NBRC 106136", "accession": "GCA_007991675.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 82.5418, "matched_fragments": 848, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", 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898, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000518665.1", "gtdb_species": "s__Microvirga flocculans", "ani": 82.8423, "matched_fragments": 776, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Microvirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003332305.1", "gtdb_species": "s__Microvirga aerophila", "ani": 82.6526, "matched_fragments": 845, "total_fragments": 1485, 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