{ "type": "genome", "identifier": "GCF_020532765.1", "organism": "Polaribacter gangjinensis", "title": "Polaribacter gangjinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Center for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020532765.1", "bioproject": "PRJNA224116", "biosample": "SAMN12419158", "wgs_master": "VRML00000000.1", "refseq_category": "na", "taxid": "574710", "species_taxid": "574710", "organism_name": "Polaribacter gangjinensis", "infraspecific_name": "strain=JCM 16152", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM2053276v1", "asm_submitter": "GEOMAR Helmholtz Center for Ocean Research Kiel", "gbrs_paired_asm": "GCA_020532765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/532/765/GCF_020532765.1_ASM2053276v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2925494", "genome_size_ungapped": "2925494", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020532765.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2604", "protein_coding_gene_count": "2550", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter gangjinensis" ], "sample_taxid": [ "574710" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: shellfish-growing area in Gangjin Bay" ], "sample_host_location_id": [], "data_size": "0.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2925494", "Number of Sequences": "45", "Longest Sequences (bp)": "877069", "N50 (bp)": "243989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.5", "Number of CDSs": "2543", "Average Protein Length": "348.6", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter gangjinensis", "strain": "strain=JCM 16152", "accession": "GCA_020532765.1", "taxid": 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"total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 78.6843, "matched_fragments": 438, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 78.5703, "matched_fragments": 427, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 78.555, "matched_fragments": 403, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 78.5129, "matched_fragments": 461, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 78.5116, "matched_fragments": 428, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 78.5081, "matched_fragments": 448, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter 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"GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 78.3702, "matched_fragments": 433, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 78.3162, "matched_fragments": 425, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter litorisediminis", "strain": "strain=OITF-11", "accession": "GCA_019968605.1", "taxid": 1908341, "species_taxid": 1908341, "relation_to_type": "type", "validated": true, "ani": 78.0369, "matched_fragments": 437, "total_fragments": 959, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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