{
    "type": "genome",
    "identifier": "GCF_020539525.1",
    "organism": "Pseudogemmobacter faecipullorum",
    "title": "Pseudogemmobacter faecipullorum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nation Chung Hsing University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020539525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15567483",
        "wgs_master": "JACDXX000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2755041",
        "species_taxid": "2755041",
        "organism_name": "Pseudogemmobacter faecipullorum",
        "infraspecific_name": "strain=CC-YST710",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/20",
        "asm_name": "ASM2053952v1",
        "asm_submitter": "Nation Chung Hsing University",
        "gbrs_paired_asm": "GCA_020539525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/539/525/GCF_020539525.1_ASM2053952v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4374526",
        "genome_size_ungapped": "4374526",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "107",
        "contig_count": "107",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020539525.1-RS_2024_07_08",
        "annotation_date": "2024-07-08",
        "total_gene_count": "4332",
        "protein_coding_gene_count": "4128",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-20",
    "dateModified": "2021-10-20",
    "datePublished": "2021-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudogemmobacter faecipullorum"
        ],
        "sample_taxid": [
            "2755041"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Taiwan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.209 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4374526",
        "Number of Sequences": "107",
        "Longest Sequences (bp)": "394883",
        "N50 (bp)": "199916",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.9",
        "Number of CDSs": "4226",
        "Average Protein Length": "301.6",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudogemmobacter bohemicus",
                "strain": "strain=Cd-10",
                "accession": "GCA_003290025.1",
                "taxid": 2250708,
                "species_taxid": 2250708,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9964,
                "matched_fragments": 783,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudogemmobacter hezensis",
                "strain": "strain=D13-10-4-6",
                "accession": "GCA_013155295.1",
                "taxid": 2737662,
                "species_taxid": 2737662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7118,
                "matched_fragments": 723,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter serpentinus",
                "strain": "strain=HB-1",
                "accession": "GCA_008973825.1",
                "taxid": 2652247,
                "species_taxid": 2652247,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9754,
                "matched_fragments": 484,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter caeruleus",
                "strain": "strain=N8",
                "accession": "GCA_008271655.1",
                "taxid": 2595004,
                "species_taxid": 2595004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7017,
                "matched_fragments": 434,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter aquatilis",
                "strain": "strain=DSM 3857",
                "accession": "GCA_900110025.1",
                "taxid": 933059,
                "species_taxid": 933059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3201,
                "matched_fragments": 457,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter lanyuensis",
                "strain": "strain=KCTC 23714",
                "accession": "GCA_014652355.1",
                "taxid": 1054497,
                "species_taxid": 1054497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2673,
                "matched_fragments": 395,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter fulva",
                "strain": "strain=con5",
                "accession": "GCA_018798885.1",
                "taxid": 2840474,
                "species_taxid": 2840474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2154,
                "matched_fragments": 495,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter caeni",
                "strain": "strain=CGMCC 1.7745",
                "accession": "GCA_007830625.1",
                "taxid": 589035,
                "species_taxid": 589035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0715,
                "matched_fragments": 462,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter caeni",
                "strain": "strain=DSM 21823",
                "accession": "GCA_003054195.1",
                "taxid": 589035,
                "species_taxid": 589035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0234,
                "matched_fragments": 450,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter changlensis",
                "strain": "strain=DSM 18774",
                "accession": "GCA_003254335.1",
                "taxid": 402884,
                "species_taxid": 402884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9636,
                "matched_fragments": 425,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter changlensis",
                "strain": "strain=JA139",
                "accession": "GCA_003034985.1",
                "taxid": 402884,
                "species_taxid": 402884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9357,
                "matched_fragments": 404,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tabrizicola alkalilacus",
                "strain": "strain=DJC",
                "accession": "GCA_003443995.1",
                "taxid": 2305252,
                "species_taxid": 2305252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8289,
                "matched_fragments": 407,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6846,
                "matched_fragments": 312,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter aquaticus",
                "strain": "strain=A1-9",
                "accession": "GCA_007859075.1",
                "taxid": 490185,
                "species_taxid": 490185,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6639,
                "matched_fragments": 318,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinirhodobacter hankyongi",
                "strain": "strain=BO-81",
                "accession": "GCA_003664585.1",
                "taxid": 2294033,
                "species_taxid": 2294033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5053,
                "matched_fragments": 368,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter sediminicola",
                "strain": "strain=JA983",
                "accession": "GCA_007668225.1",
                "taxid": 2584941,
                "species_taxid": 2584941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5024,
                "matched_fragments": 321,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tabrizicola algicola",
                "strain": "strain=ETT8",
                "accession": "GCA_010915705.1",
                "taxid": 2709381,
                "species_taxid": 2709381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3284,
                "matched_fragments": 371,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioclava dalianensis",
                "strain": "strain=DLFJ1-1",
                "accession": "GCA_000715505.1",
                "taxid": 1185766,
                "species_taxid": 1185766,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2901,
                "matched_fragments": 296,
                "total_fragments": 1410,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016405985.1",
                "gtdb_species": "s__Pseudogemmobacter sp016405985",
                "ani": 81.0449,
                "matched_fragments": 800,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudogemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003290025.1",
                "gtdb_species": "s__Pseudogemmobacter bohemicus",
                "ani": 80.9449,
                "matched_fragments": 789,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudogemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900609055.1",
                "gtdb_species": "s__Pseudogemmobacter humi",
                "ani": 80.8155,
                "matched_fragments": 739,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudogemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013155295.1",
                "gtdb_species": "s__Pseudogemmobacter sp013155295",
                "ani": 80.7341,
                "matched_fragments": 720,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudogemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105075.1",
                "gtdb_species": "s__Pseudogemmobacter sp900105075",
                "ani": 80.6768,
                "matched_fragments": 762,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudogemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018798885.1",
                "gtdb_species": "s__Gemmobacter sp018798885",
                "ani": 78.2257,
                "matched_fragments": 493,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002900975.1",
                "gtdb_species": "s__Tabrizicola aquatica",
                "ani": 77.4481,
                "matched_fragments": 366,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tabrizicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000740785.1",
                "gtdb_species": "s__Paenirhodobacter enshiensis",
                "ani": 77.3907,
                "matched_fragments": 286,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paenirhodobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010915705.1",
                "gtdb_species": "s__ETT8 sp010915705",
                "ani": 77.3357,
                "matched_fragments": 370,
                "total_fragments": 1410,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__ETT8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pseudogemmobacter",
        "faecipullorum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}