{
    "type": "genome",
    "identifier": "GCF_020547085.1",
    "organism": "Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539",
    "title": "Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ruder Boskovic Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020547085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11332832",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "243230",
        "species_taxid": "1299",
        "organism_name": "Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539",
        "infraspecific_name": "strain=ATCC 13939 substr. R6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/25",
        "asm_name": "ASM2054708v1",
        "asm_submitter": "Ruder Boskovic Institute",
        "gbrs_paired_asm": "GCA_020547085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/547/085/GCF_020547085.1_ASM2054708v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3251093",
        "genome_size_ungapped": "3251093",
        "gc_percent": "66.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020547085.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "3183",
        "protein_coding_gene_count": "3094",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-25",
    "dateModified": "2021-10-25",
    "datePublished": "2021-10-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539"
        ],
        "sample_taxid": [
            "243230"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.890 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3251093",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2645384",
        "N50 (bp)": "2645384",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.6",
        "Number of CDSs": "3170",
        "Average Protein Length": "305.5",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939 substr. R6",
                "accession": "GCA_020547085.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1081,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939 substr. R2",
                "accession": "GCA_020547025.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
                "matched_fragments": 1059,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939 substr. S1",
                "accession": "GCA_020546705.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9984,
                "matched_fragments": 1067,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939 substr. R1",
                "accession": "GCA_020546805.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9977,
                "matched_fragments": 1061,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939 substr. S2",
                "accession": "GCA_020546785.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9946,
                "matched_fragments": 1070,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=ATCC 13939",
                "accession": "GCA_020546685.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9926,
                "matched_fragments": 1076,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=R1",
                "accession": "GCA_000008565.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.95,
                "matched_fragments": 1070,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deinococcus radiodurans",
                "strain": "strain=DSM 20539",
                "accession": "GCA_000685985.1",
                "taxid": 1299,
                "species_taxid": 1299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9479,
                "matched_fragments": 1024,
                "total_fragments": 1082,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000008565.1",
                "gtdb_species": "s__Deinococcus radiodurans",
                "ani": 99.95,
                "matched_fragments": 1070,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011067105.1",
                "gtdb_species": "s__Deinococcus wulumuqiensis",
                "ani": 87.4176,
                "matched_fragments": 855,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "97.50",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_900109185.1",
                "gtdb_species": "s__Deinococcus reticulitermitis",
                "ani": 80.743,
                "matched_fragments": 636,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000252445.1",
                "gtdb_species": "s__Deinococcus gobiensis",
                "ani": 80.4637,
                "matched_fragments": 606,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001424185.1",
                "gtdb_species": "s__Deinococcus sp001424185",
                "ani": 79.6533,
                "matched_fragments": 566,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009377345.1",
                "gtdb_species": "s__Deinococcus sp009377345",
                "ani": 79.6445,
                "matched_fragments": 490,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014201885.1",
                "gtdb_species": "s__Deinococcus budaensis",
                "ani": 79.5298,
                "matched_fragments": 546,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000599865.1",
                "gtdb_species": "s__Deinococcus phoenicis",
                "ani": 79.4579,
                "matched_fragments": 536,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647075.1",
                "gtdb_species": "s__Deinococcus aerophilus",
                "ani": 79.1102,
                "matched_fragments": 487,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002897375.1",
                "gtdb_species": "s__Deinococcus aerius",
                "ani": 79.0345,
                "matched_fragments": 502,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003028415.1",
                "gtdb_species": "s__Deinococcus sp003028415",
                "ani": 78.9087,
                "matched_fragments": 504,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003444775.1",
                "gtdb_species": "s__Deinococcus ficus",
                "ani": 78.8234,
                "matched_fragments": 460,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001485435.1",
                "gtdb_species": "s__Deinococcus grandis",
                "ani": 78.5079,
                "matched_fragments": 497,
                "total_fragments": 1082,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.65",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.302,
        "doubling_h": 0.361,
        "growth_tmp": 31.667,
        "optimum_tmp": 33.5,
        "optimum_ph": 7.156,
        "genome_size": 3288309.778,
        "gc_content": 63.833,
        "coding_genes": 3127.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.5,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Deinococcus",
        "radiodurans",
        "R1",
        "=",
        "ATCC",
        "13939",
        "=",
        "DSM",
        "20539"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}