{ "type": "genome", "identifier": "GCF_020564935.1", "organism": "Streptomyces pinistramenti", "title": "Streptomyces pinistramenti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nicolaus Copernicus University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020564935.1", "bioproject": "PRJNA224116", "biosample": "SAMN22350879", "wgs_master": "JAJCXB000000000.1", "refseq_category": "reference genome", "taxid": "2884812", "species_taxid": "2884812", "organism_name": "Streptomyces pinistramenti", "infraspecific_name": "strain=SF28", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/25", "asm_name": "ASM2056493v1", "asm_submitter": "Nicolaus Copernicus University", "gbrs_paired_asm": "GCA_020564935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/564/935/GCF_020564935.1_ASM2056493v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7853467", "genome_size_ungapped": "7853467", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020564935.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6960", "protein_coding_gene_count": "6639", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-25", "dateModified": "2021-10-25", "datePublished": "2021-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces pinistramenti" ], "sample_taxid": [ "2884812" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Poland: Torun Basin" ], "sample_host_location_id": [], "data_size": "2.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7853467", "Number of Sequences": "133", "Longest Sequences (bp)": "366021", "N50 (bp)": "117612", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "7017", "Average Protein Length": "320.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "3", "Number of tRNAs": "82", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"status": "below_threshold" }, { "organism_name": "Streptomyces inhibens", "strain": "strain=NEAU-D10", "accession": "GCA_003389455.1", "taxid": 2293571, "species_taxid": 2293571, "relation_to_type": "type", "validated": true, "ani": 85.797, "matched_fragments": 1545, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 85.7319, "matched_fragments": 1592, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces piniterrae", "strain": "strain=jys28", "accession": "GCA_005048155.1", "taxid": 2571125, "species_taxid": 2571125, "relation_to_type": "type", "validated": true, "ani": 85.6789, "matched_fragments": 1582, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_019880305.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 85.656, "matched_fragments": 1638, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 85.6192, "matched_fragments": 1576, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kronopolitis", "strain": "strain=CGMCC 4.7323", "accession": "GCA_014646275.1", "taxid": 1612435, "species_taxid": 1612435, "relation_to_type": "type", "validated": true, "ani": 85.5932, "matched_fragments": 1536, "total_fragments": 2554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sioyaensis", "strain": 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