{ "type": "genome", "identifier": "GCF_020567375.1", "organism": "Janibacter melonis", "title": "Janibacter melonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020567375.1", "bioproject": "PRJNA224116", "biosample": "SAMN22359520", "wgs_master": "JAJBZM000000000.1", "refseq_category": "na", "taxid": "262209", "species_taxid": "262209", "organism_name": "Janibacter melonis", "infraspecific_name": "strain=NBRC107855", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/25", "asm_name": "ASM2056737v1", "asm_submitter": "Yunnan University", "gbrs_paired_asm": "GCA_020567375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/567/375/GCF_020567375.1_ASM2056737v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3490337", "genome_size_ungapped": "3490113", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020567375.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3355", "protein_coding_gene_count": "3295", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-25", "dateModified": "2021-10-25", "datePublished": "2021-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Janibacter melonis" ], "sample_taxid": [ "262209" ], "sample_host_organism": [ "Cucumis melo" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.906 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3490337", "Number of Sequences": "5", "Longest Sequences (bp)": "1298592", "N50 (bp)": "1216088", "Gap Ratio (%)": "0.006647", "GCcontent (%)": "72.9", "Number of CDSs": "3331", "Average Protein Length": "324.1", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1161, "total_fragments": 1161, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 84.2337, "matched_fragments": 729, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 82.1677, "matched_fragments": 666, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 82.1148, "matched_fragments": 637, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter indicus", "strain": "strain=CGMCC 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"species_taxid": 53458, "relation_to_type": "type", "validated": true, "ani": 80.8303, "matched_fragments": 599, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, "relation_to_type": "type", "validated": true, "ani": 80.2311, "matched_fragments": 631, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 80.2294, "matched_fragments": 630, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus flavus", "strain": "strain=CMS6Z-2", "accession": "GCA_004025965.2", "taxid": 2502783, "species_taxid": 2502783, "relation_to_type": "type", "validated": true, "ani": 79.8077, "matched_fragments": 571, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus duodecadis", "strain": "strain=DSM 12806", "accession": "GCA_002846495.1", "taxid": 173053, "species_taxid": 173053, "relation_to_type": "type", "validated": true, "ani": 79.6928, "matched_fragments": 535, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 78.8335, "matched_fragments": 442, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 78.6951, "matched_fragments": 451, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 78.2446, "matched_fragments": 377, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003721155.3", "gtdb_species": "s__Marihabitans melonis", "ani": 98.3367, "matched_fragments": 1098, "total_fragments": 1161, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Marihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 16, "status": 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