{ "type": "genome", "identifier": "GCF_020616335.1", "organism": "Corynebacterium uberis", "title": "Corynebacterium uberis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Veterinary Bacteriology, University of Bern", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020616335.1", "bioproject": "PRJNA224116", "biosample": "SAMN22160853", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2883169", "species_taxid": "2883169", "organism_name": "Corynebacterium uberis", "infraspecific_name": "strain=18M0132", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2061633v1", "asm_submitter": "Institute of Veterinary Bacteriology, University of Bern", "gbrs_paired_asm": "GCA_020616335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/616/335/GCF_020616335.1_ASM2061633v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2533318", "genome_size_ungapped": "2533318", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020616335.1-RS_2024_05_18", "annotation_date": "2024-05-18", "total_gene_count": "2293", "protein_coding_gene_count": "2215", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium uberis" ], "sample_taxid": [ "2883169" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.702 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2533318", "Number of Sequences": "1", "Longest Sequences (bp)": "2533318", "N50 (bp)": "2533318", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "2292", "Average Protein Length": "324.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "12", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium uberis", "strain": "strain=18M0132", "accession": "GCA_020616335.1", "taxid": 2883169, "species_taxid": 2883169, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.2612, "matched_fragments": 250, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium otitidis", "strain": "strain=ATCC 51513", "accession": "GCA_000296405.1", "taxid": 29321, "species_taxid": 29321, "relation_to_type": "type", "validated": true, "ani": 78.1542, "matched_fragments": 186, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium otitidis", "strain": "strain=ATCC 51513", "accession": "GCA_000297795.2", "taxid": 29321, "species_taxid": 29321, "relation_to_type": "type", "validated": true, "ani": 78.0154, "matched_fragments": 187, "total_fragments": 844, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000375365.1", "gtdb_species": "s__Corynebacterium mastitidis", "ani": 79.3729, "matched_fragments": 361, "total_fragments": 844, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001941485.1", "gtdb_species": "s__Corynebacterium frankenforstense", "ani": 79.199, "matched_fragments": 343, "total_fragments": 844, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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