{ "type": "genome", "identifier": "GCF_020618775.1", "organism": "Acidisoma silvae", "title": "Acidisoma silvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Occidental Brittany", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020618775.1", "bioproject": "PRJNA224116", "biosample": "SAMN17370876", "wgs_master": "JAESVB000000000.1", "refseq_category": "reference genome", "taxid": "2802396", "species_taxid": "2802396", "organism_name": "Acidisoma silvae", "infraspecific_name": "strain=HW T2.11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2061877v1", "asm_submitter": "University of Occidental Brittany", "gbrs_paired_asm": "GCA_020618775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/618/775/GCF_020618775.1_ASM2061877v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5436125", "genome_size_ungapped": "5436125", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020618775.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5178", "protein_coding_gene_count": "5053", "non_coding_gene_count": "52", "pubmed_id": "34683374" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidisoma silvae" ], "sample_taxid": [ "2802396" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France:Champenoux" ], "sample_host_location_id": [], "data_size": "1.514 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5436125", "Number of Sequences": "82", "Longest Sequences (bp)": "974441", "N50 (bp)": "361251", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "5143", "Average Protein Length": "310.5", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidisoma silvae", "strain": "strain=HW T2.11", "accession": "GCA_020618775.1", "taxid": 2802396, "species_taxid": 2802396, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1768, "total_fragments": 1772, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidisoma cellulosilyticum", "strain": "strain=HW T5.17", "accession": "GCA_020621385.1", "taxid": 2802395, "species_taxid": 2802395, "relation_to_type": "type", "validated": true, "ani": 85.1901, "matched_fragments": 1184, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 77.1173, "matched_fragments": 164, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.0967, "matched_fragments": 208, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.0245, "matched_fragments": 210, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 76.9811, "matched_fragments": 215, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.9601, "matched_fragments": 318, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.9452, "matched_fragments": 318, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter nataicola", "strain": "strain=LMG 1536", "accession": "GCA_003207795.1", "taxid": 265960, "species_taxid": 265960, "relation_to_type": "type", "validated": true, "ani": 76.9151, "matched_fragments": 136, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas selenitidurans", "strain": "strain=BU-1", "accession": "GCA_012103215.1", "taxid": 2716335, "species_taxid": 2716335, "relation_to_type": "type", "validated": true, "ani": 76.8346, "matched_fragments": 256, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.7962, "matched_fragments": 191, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 76.7345, "matched_fragments": 251, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 76.7088, "matched_fragments": 264, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 76.6595, "matched_fragments": 256, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 76.641, "matched_fragments": 263, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.6225, "matched_fragments": 208, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 76.6219, "matched_fragments": 226, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 76.6178, "matched_fragments": 239, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.5785, "matched_fragments": 208, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia mucosa", "strain": "strain=T6", "accession": "GCA_016775475.1", "taxid": 2804532, "species_taxid": 2804532, "relation_to_type": "type", "validated": true, "ani": 76.5631, "matched_fragments": 273, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia arida", "strain": "strain=T18", "accession": "GCA_016773205.1", "taxid": 2804533, "species_taxid": 2804533, "relation_to_type": "type", "validated": true, "ani": 76.273, "matched_fragments": 253, "total_fragments": 1772, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009765865.1", "gtdb_species": "s__Acidisoma sp009765865", "ani": 78.1814, "matched_fragments": 479, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018971455.1", "gtdb_species": "s__REEB85 sp018971455", "ani": 77.2899, "matched_fragments": 169, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__REEB85", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174275.1", "gtdb_species": "s__Gluconacetobacter takamatsuzukensis", "ani": 77.2516, "matched_fragments": 219, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903924855.1", "gtdb_species": "s__CAIQQQ01 sp903924855", "ani": 77.0276, "matched_fragments": 218, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIQQQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903907955.1", "gtdb_species": "s__BOG-930 sp903907955", "ani": 77.0261, "matched_fragments": 250, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_000021325.1", "gtdb_species": "s__Gluconacetobacter diazotrophicus", "ani": 77.0245, "matched_fragments": 210, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_008630155.1", "gtdb_species": "s__Rhodovastum atsumiense", "ani": 76.9751, "matched_fragments": 307, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodovastum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903881515.1", "gtdb_species": "s__CAIRTN01 sp903881515", "ani": 76.9476, "matched_fragments": 211, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIRTN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903865895.1", "gtdb_species": "s__CAIYPH01 sp903865895", "ani": 76.8715, "matched_fragments": 255, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIYPH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018129085.1", "gtdb_species": "s__Roseomonas_C hellenica", "ani": 76.8651, "matched_fragments": 279, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012103215.1", "gtdb_species": "s__Roseomonas_A sp012103215", "ani": 76.8366, "matched_fragments": 256, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903900905.1", "gtdb_species": "s__CAIXEA01 sp903900905", "ani": 76.8307, "matched_fragments": 190, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIXEA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_902706185.1", "gtdb_species": "s__Roseomonas sp902706185", "ani": 76.8238, "matched_fragments": 334, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765685.1", "gtdb_species": "s__LMUY01 sp009765685", "ani": 76.8076, "matched_fragments": 241, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__LMUY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011332665.1", "gtdb_species": "s__Acidibrevibacterium sp011332665", "ani": 76.7698, "matched_fragments": 174, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidibrevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017813395.1", "gtdb_species": "s__Roseomonas sp017813395", "ani": 76.7623, "matched_fragments": 201, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017304945.1", "gtdb_species": "s__69-11 sp017304945", "ani": 76.7618, "matched_fragments": 267, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__69-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005844085.1", "gtdb_species": "s__Lichenicoccus roseus", "ani": 76.7577, "matched_fragments": 263, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002631185.1", "gtdb_species": "s__Roseomonas rhizosphaerae", "ani": 76.7277, "matched_fragments": 252, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017654485.1", "gtdb_species": "s__Roseomonas sp017654485", "ani": 76.7257, "matched_fragments": 262, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003116135.1", "gtdb_species": "s__Roseomonas aestuarii", "ani": 76.7114, "matched_fragments": 277, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903915725.1", "gtdb_species": "s__Rhodopila sp903915725", "ani": 76.6935, "matched_fragments": 224, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001898425.1", "gtdb_species": "s__69-11 sp001898425", "ani": 76.6615, "matched_fragments": 257, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__69-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002937115.1", "gtdb_species": "s__Rhodopila globiformis", "ani": 76.6315, "matched_fragments": 264, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903851415.1", "gtdb_species": "s__Rhodopila sp903851415", "ani": 76.6163, "matched_fragments": 217, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002422345.1", "gtdb_species": "s__UBA6159 sp002422345", "ani": 76.5577, "matched_fragments": 147, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__UBA6159", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019240395.1", "gtdb_species": "s__JAFAYA01 sp019240395", "ani": 76.5432, "matched_fragments": 249, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__JAFAYA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903839965.1", "gtdb_species": "s__BOG-930 sp903839965", "ani": 76.41, "matched_fragments": 155, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903845065.1", "gtdb_species": "s__CAIYPH01 sp903845065", "ani": 76.195, "matched_fragments": 226, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIYPH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805625.1", "gtdb_species": "s__CADCTG01 sp902805625", "ani": 75.9386, "matched_fragments": 147, "total_fragments": 1772, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CADCTG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.126, "cell_length": 0.212, "doubling_h": null, "growth_tmp": 20.0, "optimum_tmp": 20.5, "optimum_ph": 5.425, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acidisoma", "silvae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }