{ "type": "genome", "identifier": "GCF_020621385.1", "organism": "Acidisoma cellulosilyticum", "title": "Acidisoma cellulosilyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Occidental Brittany", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020621385.1", "bioproject": "PRJNA224116", "biosample": "SAMN17293405", "wgs_master": "JAESVA000000000.1", "refseq_category": "reference genome", "taxid": "2802395", "species_taxid": "2802395", "organism_name": "Acidisoma cellulosilyticum", "infraspecific_name": "strain=HW T5.17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/26", "asm_name": "ASM2062138v1", "asm_submitter": "University of Occidental Brittany", "gbrs_paired_asm": "GCA_020621385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/621/385/GCF_020621385.1_ASM2062138v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6004381", "genome_size_ungapped": "6004381", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020621385.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "5706", "protein_coding_gene_count": "5551", "non_coding_gene_count": "63", "pubmed_id": "34683374" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-26", "dateModified": "2021-10-26", "datePublished": "2021-10-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidisoma cellulosilyticum" ], "sample_taxid": [ "2802395" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France:Champenoux" ], "sample_host_location_id": [], "data_size": "1.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6004381", "Number of Sequences": "59", "Longest Sequences (bp)": "922216", "N50 (bp)": "572597", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "5672", "Average Protein Length": "312.0", "Coding Ratio (%)": "88.4", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidisoma cellulosilyticum", "strain": "strain=HW T5.17", "accession": "GCA_020621385.1", "taxid": 2802395, "species_taxid": 2802395, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1978, "total_fragments": 1983, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidisoma silvae", "strain": "strain=HW T2.11", "accession": "GCA_020618775.1", "taxid": 2802396, "species_taxid": 2802396, "relation_to_type": "type", "validated": true, "ani": 84.9837, "matched_fragments": 1203, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 77.1575, "matched_fragments": 216, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 77.1518, "matched_fragments": 234, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 77.0559, "matched_fragments": 293, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 77.0546, "matched_fragments": 216, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 77.0452, "matched_fragments": 249, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 76.9833, "matched_fragments": 217, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.9006, "matched_fragments": 191, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 76.8285, "matched_fragments": 242, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 76.8084, "matched_fragments": 233, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 76.7783, "matched_fragments": 183, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 76.7585, "matched_fragments": 269, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.7504, "matched_fragments": 188, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 76.7445, "matched_fragments": 302, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 76.7445, "matched_fragments": 210, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas coralli", "strain": "strain=M0104", "accession": "GCA_009829925.1", "taxid": 2545983, "species_taxid": 2545983, "relation_to_type": "type", "validated": true, "ani": 76.6296, "matched_fragments": 247, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 76.6259, "matched_fragments": 188, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter henricii", "strain": "strain=CB4", "accession": "GCA_001414055.1", "taxid": 69395, "species_taxid": 69395, "relation_to_type": "type", "validated": true, "ani": 76.2827, "matched_fragments": 88, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas goettingensis", "strain": "strain=LVF2", "accession": "GCA_017487405.1", "taxid": 2774190, "species_taxid": 2774190, "relation_to_type": "type", "validated": true, "ani": 75.886, "matched_fragments": 107, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009765865.1", "gtdb_species": "s__Acidisoma sp009765865", "ani": 78.0545, "matched_fragments": 515, "total_fragments": 1983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174395.1", "gtdb_species": "s__Gluconacetobacter aggeris", "ani": 76.9998, "matched_fragments": 195, "total_fragments": 1983, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000964365.1", "gtdb_species": "s__Acidisphaera rubrifaciens", "ani": 76.7768, "matched_fragments": 182, "total_fragments": 1983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001982615.1", "gtdb_species": "s__Roseomonas deserti", "ani": 76.7699, "matched_fragments": 299, "total_fragments": 1983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765685.1", "gtdb_species": "s__LMUY01 sp009765685", "ani": 76.6903, "matched_fragments": 215, "total_fragments": 1983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__LMUY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898425.1", "gtdb_species": "s__69-11 sp001898425", "ani": 76.6852, "matched_fragments": 250, "total_fragments": 1983, "gtdb_taxonomy": 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