{ "type": "genome", "identifier": "GCF_020686965.1", "organism": "Hominiventricola filiformis", "title": "Hominiventricola filiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RWTH Aachen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020686965.1", "bioproject": "PRJNA224116", "biosample": "SAMN22081903", "wgs_master": "JAJEPS000000000.1", "refseq_category": "reference genome", "taxid": "2885352", "species_taxid": "2885352", "organism_name": "Hominiventricola filiformis", "infraspecific_name": "strain=CLA-AA-H276", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/31", "asm_name": "ASM2068696v1", "asm_submitter": "RWTH Aachen University Hospital", "gbrs_paired_asm": "GCA_020686965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/686/965/GCF_020686965.1_ASM2068696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3494392", "genome_size_ungapped": "3494392", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020686965.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3506", "protein_coding_gene_count": "3368", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-31", "dateModified": "2021-10-31", "datePublished": "2021-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Hominiventricola filiformis" ], "sample_taxid": [ "2885352" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Aachen" ], "sample_host_location_id": [], "data_size": "0.991 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3494392", "Number of Sequences": "55", "Longest Sequences (bp)": "558242", "N50 (bp)": "175554", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.1", "Number of CDSs": "3408", "Average Protein Length": "308.1", "Coding Ratio (%)": "90.1", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 81.7021, "matched_fragments": 90, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 81.289, "matched_fragments": 95, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4314, "matched_fragments": 142, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 79.6372, "matched_fragments": 91, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia hansenii", "strain": "strain=DSM 20583", "accession": "GCA_025147655.1", "taxid": 1322, "species_taxid": 1322, "relation_to_type": "type", "validated": true, "ani": 79.6316, "matched_fragments": 71, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1 82", "accession": "GCA_025151715.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.4576, "matched_fragments": 99, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 79.4508, "matched_fragments": 85, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.2466, "matched_fragments": 100, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.2316, "matched_fragments": 98, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus phoceensis", "strain": "strain=Marseille-P3062", "accession": "GCA_900104635.1", "taxid": 1870993, "species_taxid": 1870993, "relation_to_type": "type", "validated": true, "ani": 79.2002, "matched_fragments": 66, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 78.3183, "matched_fragments": 122, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.7927, "matched_fragments": 80, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.6256, "matched_fragments": 79, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sellimonas caecigallum", "strain": "strain=SW451", "accession": "GCA_019754295.1", "taxid": 2592333, "species_taxid": 2592333, "relation_to_type": "type", "validated": true, "ani": 77.1714, "matched_fragments": 53, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Merdimonas faecis", "strain": "strain=BR31", "accession": "GCA_001754075.1", "taxid": 1653435, "species_taxid": 1653435, "relation_to_type": "type", "validated": true, "ani": 77.1314, "matched_fragments": 72, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 77.1205, "matched_fragments": 73, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=NCTC11035", "accession": "GCA_900461125.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 77.0995, "matched_fragments": 73, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0125, "matched_fragments": 75, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", "strain": "strain=DSM 14469", "accession": "GCA_025148285.1", "taxid": 168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 76.9616, "matched_fragments": 69, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5657, "matched_fragments": 60, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4476, "matched_fragments": 56, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 76.2091, "matched_fragments": 69, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 76.1864, "matched_fragments": 65, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018228645.1", "gtdb_species": "s__Choladocola sp003481535", "ani": 97.7532, "matched_fragments": 825, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.76", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_018223365.1", "gtdb_species": "s__Choladocola sp018223365", "ani": 92.7863, "matched_fragments": 727, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003480725.1", "gtdb_species": "s__Choladocola sp003480725", "ani": 82.2172, "matched_fragments": 448, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.75", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000225345.1", "gtdb_species": "s__Roseburia hominis", "ani": 81.7021, "matched_fragments": 90, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "95.20", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_900104635.1", "gtdb_species": "s__Faecalimonas phoceensis", "ani": 79.2739, "matched_fragments": 65, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.60", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_018376135.1", "gtdb_species": "s__Choladocola sp018376135", "ani": 78.6701, "matched_fragments": 274, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017558865.1", "gtdb_species": "s__Choladocola sp017558865", "ani": 78.4422, "matched_fragments": 199, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002160135.1", "gtdb_species": "s__Choladocola avistercoris", "ani": 77.7038, "matched_fragments": 207, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_009774145.1", "gtdb_species": "s__Choladocola sp009774145", "ani": 77.4898, "matched_fragments": 213, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009774155.1", "gtdb_species": "s__Choladocola sp009774155", "ani": 77.3907, "matched_fragments": 167, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910583895.1", "gtdb_species": "s__Choladocola sp910583895", "ani": 77.3895, "matched_fragments": 175, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910583615.1", "gtdb_species": "s__Choladocola sp910583615", "ani": 77.351, "matched_fragments": 191, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910575445.1", "gtdb_species": "s__Choladocola sp910575445", "ani": 77.3446, "matched_fragments": 148, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_016899975.1", "gtdb_species": "s__Fusicatenibacter sp900543115", "ani": 77.1789, "matched_fragments": 77, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Fusicatenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.78", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_012520645.1", "gtdb_species": "s__JAAYNV01 sp012520645", "ani": 76.1662, "matched_fragments": 67, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__JAAYNV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Hominiventricola", "filiformis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }