{ "type": "genome", "identifier": "GCF_020686985.1", "organism": "Brotaphodocola catenula", "title": "Brotaphodocola catenula", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RWTH Aachen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020686985.1", "bioproject": "PRJNA224116", "biosample": "SAMN22081901", "wgs_master": "JAJEPU000000000.1", "refseq_category": "reference genome", "taxid": "2885361", "species_taxid": "2885361", "organism_name": "Brotaphodocola catenula", "infraspecific_name": "strain=CLA-AA-H274", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/31", "asm_name": "ASM2068698v1", "asm_submitter": "RWTH Aachen University Hospital", "gbrs_paired_asm": "GCA_020686985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/686/985/GCF_020686985.1_ASM2068698v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3322202", "genome_size_ungapped": "3322202", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020686985.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2960", "protein_coding_gene_count": "2813", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-31", "dateModified": "2021-10-31", "datePublished": "2021-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Brotaphodocola catenula" ], "sample_taxid": [ "2885361" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Aachen" ], "sample_host_location_id": [], "data_size": "0.949 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3322202", "Number of Sequences": "112", "Longest Sequences (bp)": "199038", "N50 (bp)": "68877", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "2860", "Average Protein Length": "327.6", "Coding Ratio (%)": "84.6", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_000169235.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4928, "matched_fragments": 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"below_threshold" }, { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 80.8251, "matched_fragments": 99, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 80.7268, "matched_fragments": 190, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 80.4712, "matched_fragments": 80, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 80.1907, "matched_fragments": 102, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 80.1814, "matched_fragments": 101, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9193, "matched_fragments": 78, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.886, "matched_fragments": 75, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 79.8162, "matched_fragments": 96, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6673, "matched_fragments": 75, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, 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82.3428, "matched_fragments": 293, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003481985.1", "gtdb_species": "s__Ventrimonas sp003506385", "ani": 81.2388, "matched_fragments": 307, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003435375.1", "gtdb_species": "s__Copromonas sp900066535", "ani": 81.0148, "matched_fragments": 171, 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