{ "type": "genome", "identifier": "GCF_020687205.1", "organism": "Hominisplanchenecus faecis", "title": "Hominisplanchenecus faecis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RWTH Aachen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020687205.1", "bioproject": "PRJNA224116", "biosample": "SAMN22081891", "wgs_master": "JAJEQE000000000.1", "refseq_category": "reference genome", "taxid": "2885351", "species_taxid": "2885351", "organism_name": "Hominisplanchenecus faecis", "infraspecific_name": "strain=CLA-AA-H246", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/31", "asm_name": "ASM2068720v1", "asm_submitter": "RWTH Aachen University Hospital", "gbrs_paired_asm": "GCA_020687205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/687/205/GCF_020687205.1_ASM2068720v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3266661", "genome_size_ungapped": "3266661", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020687205.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3030", "protein_coding_gene_count": "2906", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-31", "dateModified": "2021-10-31", "datePublished": "2021-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Hominisplanchenecus faecis" ], "sample_taxid": [ "2885351" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Aachen" ], "sample_host_location_id": [], "data_size": "0.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3266661", "Number of Sequences": "104", "Longest Sequences (bp)": "198425", "N50 (bp)": "49029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.1", "Number of CDSs": "2930", "Average Protein Length": "328.9", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 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"matched_fragments": 52, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 80.759, "matched_fragments": 161, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 80.5645, "matched_fragments": 184, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 80.4333, "matched_fragments": 169, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 80.3223, "matched_fragments": 134, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 80.2174, "matched_fragments": 188, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobutyricum hallii", "strain": "strain=DSM 3353", "accession": "GCA_000173975.1", "taxid": 39488, "species_taxid": 39488, "relation_to_type": "type", "validated": true, "ani": 79.8948, "matched_fragments": 71, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 79.8804, "matched_fragments": 159, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0704, "matched_fragments": 130, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.044, "matched_fragments": 128, "total_fragments": 1036, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", 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