{
    "type": "genome",
    "identifier": "GCF_020687505.1",
    "organism": "Coprococcus hominis (ex Arizal et al. 2022)",
    "title": "Coprococcus hominis (ex Arizal et al. 2022)",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "RWTH Aachen University Hospital",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020687505.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN22081876",
        "wgs_master": "JAJEQT000000000.1",
        "refseq_category": "na",
        "taxid": "2881262",
        "species_taxid": "2881262",
        "organism_name": "Coprococcus hominis (ex Arizal et al. 2022)",
        "infraspecific_name": "strain=CLA-AA-H212",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/10/31",
        "asm_name": "ASM2068750v1",
        "asm_submitter": "RWTH Aachen University Hospital",
        "gbrs_paired_asm": "GCA_020687505.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/687/505/GCF_020687505.1_ASM2068750v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2891423",
        "genome_size_ungapped": "2891423",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-29",
        "total_gene_count": "2720",
        "protein_coding_gene_count": "2637",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-10-31",
    "dateModified": "2021-10-31",
    "datePublished": "2021-10-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coprococcus hominis (ex Arizal et al. 2022)"
        ],
        "sample_taxid": [
            "2881262"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Aachen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.817 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2891423",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "736196",
        "N50 (bp)": "305852",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.2",
        "Number of CDSs": "2685",
        "Average Protein Length": "324.0",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Wujia chipingensis",
                "strain": "strain=NSJ-4",
                "accession": "GCA_014337155.1",
                "taxid": 2763670,
                "species_taxid": 2763670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2928,
                "matched_fragments": 836,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.8775,
                "matched_fragments": 106,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.8178,
                "matched_fragments": 106,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4131,
                "matched_fragments": 69,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2935,
                "matched_fragments": 71,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia obeum",
                "strain": "strain=ATCC 29174",
                "accession": "GCA_025147765.1",
                "taxid": 40520,
                "species_taxid": 40520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.057,
                "matched_fragments": 73,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia obeum",
                "strain": "strain=ATCC 29174",
                "accession": "GCA_000153905.1",
                "taxid": 40520,
                "species_taxid": 40520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.901,
                "matched_fragments": 72,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jingyaoa shaoxingensis",
                "strain": "strain=NSJ-46",
                "accession": "GCA_014385005.1",
                "taxid": 2763671,
                "species_taxid": 2763671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8851,
                "matched_fragments": 83,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1669,
                "matched_fragments": 95,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jutongia huaianensis",
                "strain": "strain=NSJ-37",
                "accession": "GCA_014384985.1",
                "taxid": 2763668,
                "species_taxid": 2763668,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.716,
                "matched_fragments": 75,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes hadrus",
                "strain": "strain=DSM 3319",
                "accession": "GCA_000332875.2",
                "taxid": 649756,
                "species_taxid": 649756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6748,
                "matched_fragments": 51,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0093,
                "matched_fragments": 76,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5693,
                "matched_fragments": 59,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014337155.1",
                "gtdb_species": "s__CAG-127 sp900319515",
                "ani": 98.2928,
                "matched_fragments": 836,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 25,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002431865.1",
                "gtdb_species": "s__CAG-127 sp002431865",
                "ani": 91.6432,
                "matched_fragments": 608,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018918185.1",
                "gtdb_species": "s__CAG-127 sp900539705",
                "ani": 91.341,
                "matched_fragments": 745,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002404515.1",
                "gtdb_species": "s__CAG-127 sp002404515",
                "ani": 90.577,
                "matched_fragments": 590,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900553925.1",
                "gtdb_species": "s__CAG-127 sp900553925",
                "ani": 89.9614,
                "matched_fragments": 470,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900767585.1",
                "gtdb_species": "s__CAG-127 sp900767585",
                "ani": 88.7656,
                "matched_fragments": 598,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017938485.1",
                "gtdb_species": "s__CAG-127 sp017938485",
                "ani": 77.8492,
                "matched_fragments": 92,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.117,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 5.775,
        "genome_size": 3287902.0,
        "gc_content": 42.676,
        "coding_genes": 2985.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Coprococcus",
        "hominis",
        "(ex",
        "Arizal",
        "et",
        "al.",
        "2022)"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}