{ "type": "genome", "identifier": "GCF_020687785.1", "organism": "Sphingopyxis yananensis", "title": "Sphingopyxis yananensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yan'an university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020687785.1", "bioproject": "PRJNA224116", "biosample": "SAMN22548111", "wgs_master": "JAJEWI000000000.1", "refseq_category": "reference genome", "taxid": "2886687", "species_taxid": "2886687", "organism_name": "Sphingopyxis yananensis", "infraspecific_name": "strain=FBM22", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/31", "asm_name": "ASM2068778v1", "asm_submitter": "Yan'an university", "gbrs_paired_asm": "GCA_020687785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/687/785/GCF_020687785.1_ASM2068778v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3208336", "genome_size_ungapped": "3208336", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020687785.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2992", "protein_coding_gene_count": "2914", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-31", "dateModified": "2021-10-31", "datePublished": "2021-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis yananensis" ], "sample_taxid": [ "2886687" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yan'an" ], "sample_host_location_id": [], "data_size": "0.897 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3208336", "Number of Sequences": "12", "Longest Sequences (bp)": "979936", "N50 (bp)": "630954", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.8", "Number of CDSs": "2987", "Average Protein Length": "317.5", "Coding Ratio (%)": "88.7", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis witflariensis", "strain": "strain=DSM 14551", "accession": "GCA_002205635.1", "taxid": 173675, "species_taxid": 173675, "relation_to_type": "type", "validated": true, "ani": 77.7967, "matched_fragments": 320, "total_fragments": 1064, "ani_threshold": 95, 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italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 77.4015, "matched_fragments": 260, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis fribergensis", "strain": "strain=Kp5.2", "accession": "GCA_000803645.1", "taxid": 1515612, "species_taxid": 1515612, "relation_to_type": "type", "validated": true, "ani": 77.3383, "matched_fragments": 260, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis macrogoltabida", "strain": "strain=203", "accession": "GCA_001314325.1", "taxid": 33050, "species_taxid": 33050, "relation_to_type": "type", "validated": true, "ani": 77.2738, "matched_fragments": 304, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": 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