{
    "type": "genome",
    "identifier": "GCF_020700235.1",
    "organism": "Haladaptatus pallidirubidus",
    "title": "Haladaptatus pallidirubidus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020700235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN22364628",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1008152",
        "species_taxid": "1008152",
        "organism_name": "Haladaptatus pallidirubidus",
        "infraspecific_name": "strain=YIM 93656",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/01",
        "asm_name": "ASM2070023v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_020700235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/700/235/GCF_020700235.1_ASM2070023v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "6270521",
        "genome_size_ungapped": "6270521",
        "gc_percent": "56.000000",
        "replicon_count": "7",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020700235.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "6588",
        "protein_coding_gene_count": "6288",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-01",
    "dateModified": "2021-11-01",
    "datePublished": "2021-11-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haladaptatus pallidirubidus"
        ],
        "sample_taxid": [
            "1008152"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xinjiang"
        ],
        "sample_host_location_id": [],
        "data_size": "1.768 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6270521",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3821467",
        "N50 (bp)": "3821467",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.1",
        "Number of CDSs": "6493",
        "Average Protein Length": "256.9",
        "Coding Ratio (%)": "79.8",
        "Number of rRNAs": "9",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Haladaptatus pallidirubidus",
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                "accession": "GCA_020700235.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haladaptatus cibarius",
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                "species_taxid": 453847,
                "relation_to_type": "type",
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                "matched_fragments": 969,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haladaptatus litoreus",
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                "accession": "GCA_900156425.1",
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                "species_taxid": 553468,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haladaptatus paucihalophilus",
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                "accession": "GCA_000376445.1",
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                "species_taxid": 367189,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haladaptatus paucihalophilus",
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                "accession": "GCA_000187225.2",
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                "species_taxid": 367189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9907,
                "matched_fragments": 771,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax gibbonsii",
                "strain": "strain=ATCC 33959",
                "accession": "GCA_000336775.1",
                "taxid": 35746,
                "species_taxid": 35746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.412,
                "matched_fragments": 312,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax marisrubri",
                "strain": "strain=SB3",
                "accession": "GCA_001469875.2",
                "taxid": 1544719,
                "species_taxid": 1544719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3372,
                "matched_fragments": 305,
                "total_fragments": 2087,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000710615.1",
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                "matched_fragments": 968,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156425.1",
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                "total_fragments": 2087,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000376445.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
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                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "96.52",
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                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001625445.1",
                "gtdb_species": "s__Haladaptatus sp001625445",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haladaptataceae;g__Haladaptatus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003298465.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001469875.2",
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            {
                "accession": "GCF_001482285.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "coding_genes": null,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Haladaptatus",
        "pallidirubidus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}