{ "type": "genome", "identifier": "GCF_020715685.1", "organism": "Dermatobacter hominis", "title": "Dermatobacter hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "COSMAX BTI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020715685.1", "bioproject": "PRJNA224116", "biosample": "SAMN22252767", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2884263", "species_taxid": "2884263", "organism_name": "Dermatobacter hominis", "infraspecific_name": "strain=Kera-3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/02", "asm_name": "ASM2071568v1", "asm_submitter": "COSMAX BTI", "gbrs_paired_asm": "GCA_020715685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/715/685/GCF_020715685.1_ASM2071568v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4661060", "genome_size_ungapped": "4661060", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020715685.1-RS_2024_09_13", "annotation_date": "2024-09-13", "total_gene_count": "4354", "protein_coding_gene_count": "4274", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-02", "dateModified": "2021-11-02", "datePublished": "2021-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Dermatobacter hominis" ], "sample_taxid": [ "2884263" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seongnam-si" ], "sample_host_location_id": [], "data_size": "1.211 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4661060", "Number of Sequences": "1", "Longest Sequences (bp)": "4661060", "N50 (bp)": "4661060", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "4334", "Average Protein Length": "330.9", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.4716, "matched_fragments": 481, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.2233, "matched_fragments": 430, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.8876, "matched_fragments": 324, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.4409, "matched_fragments": 351, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.3398, "matched_fragments": 454, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=IP6SC6", "accession": "GCA_011326735.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 75.5976, "matched_fragments": 275, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=CGMCC 4.7300", "accession": "GCA_014646175.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 75.579, "matched_fragments": 282, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Egicoccus halophilus", "strain": "strain=EGI 80432", "accession": "GCA_004300825.1", "taxid": 1670830, "species_taxid": 1670830, "relation_to_type": "type", "validated": true, "ani": 75.5123, "matched_fragments": 313, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 75.4362, "matched_fragments": 353, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 75.4277, "matched_fragments": 360, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 75.391, "matched_fragments": 323, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 75.3296, "matched_fragments": 341, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 75.3161, "matched_fragments": 454, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 75.3042, "matched_fragments": 305, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 75.2839, "matched_fragments": 127, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=DSM 44718", "accession": "GCA_900107455.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 75.2651, "matched_fragments": 417, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=NBRC 14551", "accession": "GCA_016862535.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 75.2624, "matched_fragments": 423, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix syringae", "strain": "strain=NRRL B-16468", "accession": "GCA_009498035.1", "taxid": 103733, "species_taxid": 103733, "relation_to_type": "type", "validated": true, "ani": 75.2514, "matched_fragments": 523, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus vitellinus", "strain": "strain=T13", "accession": "GCA_009906315.1", "taxid": 2696565, "species_taxid": 2696565, "relation_to_type": "type", "validated": true, "ani": 75.2168, "matched_fragments": 328, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amnibacterium kyonggiense", "strain": "strain=DSM 24782", "accession": "GCA_004364555.1", "taxid": 595671, "species_taxid": 595671, "relation_to_type": "type", "validated": true, "ani": 75.1736, "matched_fragments": 296, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia autotrophica", "strain": "strain=DSM 535", "accession": "GCA_004361965.1", "taxid": 2074, "species_taxid": 2074, "relation_to_type": "suspected-type", "validated": true, "ani": 75.1706, "matched_fragments": 405, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia autotrophica", "strain": "strain=NBRC 12743", "accession": "GCA_003945385.1", "taxid": 2074, "species_taxid": 2074, "relation_to_type": "suspected-type", "validated": true, "ani": 75.158, "matched_fragments": 411, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium sucinum", "strain": "strain=JCM 19831", "accession": "GCA_014647515.1", "taxid": 1424081, "species_taxid": 1424081, "relation_to_type": "type", "validated": true, "ani": 75.1545, "matched_fragments": 608, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora terrae", "strain": "strain=16K309", "accession": "GCA_004348435.1", "taxid": 2530384, "species_taxid": 2530384, "relation_to_type": "type", "validated": true, "ani": 75.1443, "matched_fragments": 276, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Beutenbergia cavernae", "strain": "strain=DSM 12333", "accession": "GCA_000023105.1", "taxid": 84757, "species_taxid": 84757, "relation_to_type": "type", "validated": true, "ani": 75.1231, "matched_fragments": 356, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia autotrophica", "strain": "strain=DSM 535", "accession": "GCA_002119215.1", "taxid": 2074, "species_taxid": 2074, "relation_to_type": "suspected-type", "validated": true, "ani": 75.1219, "matched_fragments": 407, "total_fragments": 1553, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003962875.1", "gtdb_species": "s__AWTP1-35 sp003962875", "ani": 82.3671, "matched_fragments": 627, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268735.1", "gtdb_species": "s__AWTP1-35 sp018268735", "ani": 80.9717, "matched_fragments": 409, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903868545.1", "gtdb_species": "s__CAIPVR01 sp903868545", "ani": 79.6125, "matched_fragments": 598, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAIPVR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903941145.1", "gtdb_species": "s__CAJANQ01 sp903941145", "ani": 79.2742, "matched_fragments": 367, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAJANQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903953195.1", "gtdb_species": "s__SXMI01 sp903953195", "ani": 79.2047, "matched_fragments": 412, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903873135.1", "gtdb_species": "s__SXMI01 sp903873135", "ani": 78.7532, "matched_fragments": 485, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_903930035.1", "gtdb_species": "s__CAJANQ01 sp903930035", "ani": 78.7177, "matched_fragments": 325, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAJANQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007118345.1", "gtdb_species": "s__SKRR01 sp007118345", "ani": 78.5612, "matched_fragments": 430, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SKRR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903852755.1", "gtdb_species": "s__SXMI01 sp903852755", "ani": 78.4126, "matched_fragments": 482, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_903925745.1", "gtdb_species": "s__SXMI01 sp903925745", "ani": 78.2256, "matched_fragments": 457, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005777415.1", "gtdb_species": "s__SXMI01 sp005777415", "ani": 78.0823, "matched_fragments": 351, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009650215.1", "gtdb_species": "s__Actinomarinicola tropica", "ani": 77.4874, "matched_fragments": 478, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 77.3685, "matched_fragments": 482, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012730075.1", "gtdb_species": "s__JAAYBP01 sp012730075", "ani": 76.9923, "matched_fragments": 380, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAYBP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002090055.1", "gtdb_species": "s__Demequina sp002090055", "ani": 75.4809, "matched_fragments": 102, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000719335.1", "gtdb_species": "s__Streptomyces sp000719335", "ani": 75.3182, "matched_fragments": 383, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648795.1", "gtdb_species": "s__Streptomyces cinnamonensis", "ani": 75.3101, "matched_fragments": 379, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "96.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_018614135.1", "gtdb_species": "s__Streptomyces sp018614135", "ani": 75.2646, "matched_fragments": 291, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018614195.1", "gtdb_species": "s__Streptomyces sp018614195", "ani": 75.2546, "matched_fragments": 351, "total_fragments": 1553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Dermatobacter", "hominis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }