{
    "type": "genome",
    "identifier": "GCF_020735725.1",
    "organism": "Alistipes senegalensis",
    "title": "Alistipes senegalensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_020735725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN22091675",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1288121",
        "species_taxid": "1288121",
        "organism_name": "Alistipes senegalensis",
        "infraspecific_name": "strain=FDAARGOS_1578",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/11/03",
        "asm_name": "ASM2073572v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_020735725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/735/725/GCF_020735725.1_ASM2073572v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4023294",
        "genome_size_ungapped": "4023294",
        "gc_percent": "58.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_020735725.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "3239",
        "protein_coding_gene_count": "3135",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-11-03",
    "dateModified": "2021-11-03",
    "datePublished": "2021-11-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alistipes senegalensis"
        ],
        "sample_taxid": [
            "1288121"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Silver Spring"
        ],
        "sample_host_location_id": [],
        "data_size": "1.127 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4023294",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4023294",
        "N50 (bp)": "4023294",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.3",
        "Number of CDSs": "3180",
        "Average Protein Length": "382.8",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "relation_to_type": "type",
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            {
                "organism_name": "Alistipes senegalensis",
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                "relation_to_type": "type",
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            {
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            },
            {
                "organism_name": "Alistipes timonensis",
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                "species_taxid": 1465754,
                "relation_to_type": "type",
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                "total_fragments": 1341,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes provencensis",
                "strain": "strain=Marseille-P2431",
                "accession": "GCA_900083545.1",
                "taxid": 1816676,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes shahii",
                "strain": "strain=WAL 8301",
                "accession": "GCA_025145845.1",
                "taxid": 328814,
                "species_taxid": 328814,
                "relation_to_type": "suspected-type",
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                "ani": 88.4062,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes montrealensis",
                "strain": "strain=kh20",
                "accession": "GCA_018362775.1",
                "taxid": 2834113,
                "species_taxid": 2834113,
                "relation_to_type": "type",
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                "ani": 85.3366,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alistipes onderdonkii",
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                "accession": "GCA_025145285.1",
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                "species_taxid": 328813,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Alistipes ihumii",
                "strain": "strain=AP11",
                "accession": "GCA_025144665.1",
                "taxid": 1470347,
                "species_taxid": 1470347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7089,
                "matched_fragments": 152,
                "total_fragments": 1341,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000312145.1",
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                "total_fragments": 1341,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
                "ani_circumscription_radius": 95.0,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes",
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                "status": "-"
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "senegalensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}