{ "type": "genome", "identifier": "GCF_020736185.1", "organism": "Campylobacter gracilis", "title": "Campylobacter gracilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020736185.1", "bioproject": "PRJNA224116", "biosample": "SAMN22091645", "wgs_master": "na", "refseq_category": "na", "taxid": "824", "species_taxid": "824", "organism_name": "Campylobacter gracilis", "infraspecific_name": "strain=FDAARGOS_1548", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/03", "asm_name": "ASM2073618v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_020736185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/736/185/GCF_020736185.1_ASM2073618v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2281730", "genome_size_ungapped": "2281730", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020736185.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "2246", "protein_coding_gene_count": "2145", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-03", "dateModified": "2021-11-03", "datePublished": "2021-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter gracilis" ], "sample_taxid": [ "824" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "0.634 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2281730", "Number of Sequences": "1", "Longest Sequences (bp)": "2281730", "N50 (bp)": "2281730", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "2137", "Average Protein Length": "294.5", "Coding Ratio (%)": "82.7", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter gracilis", "strain": "strain=FDAARGOS_1548", "accession": "GCA_020736185.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 759, "total_fragments": 760, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter gracilis", "strain": "strain=ATCC 33236", "accession": "GCA_001190745.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 757, "total_fragments": 760, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter gracilis", "strain": "strain=NCTC12738", "accession": "GCA_900446335.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 99.9991, "matched_fragments": 754, "total_fragments": 760, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter massiliensis", "strain": "strain=Marseille-Q3452", "accession": "GCA_014253065.1", "taxid": 2762557, "species_taxid": 2762557, "relation_to_type": "type", "validated": true, "ani": 80.9561, "matched_fragments": 183, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter rectus", "strain": "strain=FDAARGOS_1549", "accession": "GCA_020736205.1", "taxid": 203, "species_taxid": 203, "relation_to_type": "type", "validated": true, "ani": 80.3268, "matched_fragments": 191, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter showae", "strain": "strain=ATCC 51146", "accession": "GCA_004803815.1", "taxid": 204, "species_taxid": 204, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3228, "matched_fragments": 173, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter rectus", "strain": "strain=ATCC 33238", "accession": "GCA_004803795.1", "taxid": 203, "species_taxid": 203, "relation_to_type": "type", "validated": true, "ani": 80.3077, "matched_fragments": 188, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=DSM 6644", "accession": "GCA_000376325.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 76.912, "matched_fragments": 102, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001190745.1", "gtdb_species": "s__Campylobacter_B gracilis", "ani": 99.9996, "matched_fragments": 758, "total_fragments": 760, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_018374135.1", "gtdb_species": "s__Campylobacter_B gracilis_A", "ani": 94.0877, "matched_fragments": 620, 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"optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 2276435.8, "gc_content": 46.6, "coding_genes": 2140.0, "rRNA16S_genes": 3.0, "tRNA_genes": 41.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.888, "thermophilic_range_tmp": 0.111, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Campylobacter", "gracilis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }