{ "type": "genome", "identifier": "GCF_020736665.1", "organism": "Clostridium septicum", "title": "Clostridium septicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020736665.1", "bioproject": "PRJNA224116", "biosample": "SAMN22091648", "wgs_master": "na", "refseq_category": "na", "taxid": "1504", "species_taxid": "1504", "organism_name": "Clostridium septicum", "infraspecific_name": "strain=FDAARGOS_1551", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/03", "asm_name": "ASM2073666v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_020736665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/736/665/GCF_020736665.1_ASM2073666v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3399275", "genome_size_ungapped": "3399175", "gc_percent": "28.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020736665.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "3230", "protein_coding_gene_count": "3046", "non_coding_gene_count": "124", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-03", "dateModified": "2021-11-03", "datePublished": "2021-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium septicum" ], "sample_taxid": [ "1504" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "0.901 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3399175", "Number of Sequences": "1", "Longest Sequences (bp)": "3399175", "N50 (bp)": "3399175", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.9", "Number of CDSs": "3146", "Average Protein Length": "306.5", "Coding Ratio (%)": "85.1", "Number of rRNAs": "33", "Number of tRNAs": "87", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium septicum", "strain": "strain=FDAARGOS_1551", "accession": "GCA_020736665.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 79.2377, "matched_fragments": 448, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 78.9725, "matched_fragments": 411, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium paraputrificum", "strain": "strain=NCTC11833", "accession": "GCA_900447045.1", "taxid": 29363, "species_taxid": 29363, "relation_to_type": "type", "validated": true, "ani": 78.5877, "matched_fragments": 269, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium 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