{ "type": "genome", "identifier": "GCF_020736705.1", "organism": "Psychrobacter sanguinis", "title": "Psychrobacter sanguinis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020736705.1", "bioproject": "PRJNA224116", "biosample": "SAMN22365127", "wgs_master": "na", "refseq_category": "na", "taxid": "861445", "species_taxid": "861445", "organism_name": "Psychrobacter sanguinis", "infraspecific_name": "strain=FDAARGOS_1598", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/03", "asm_name": "ASM2073670v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_020736705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/736/705/GCF_020736705.1_ASM2073670v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3395670", "genome_size_ungapped": "3395570", "gc_percent": "41.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020736705.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "2864", "protein_coding_gene_count": "2738", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-03", "dateModified": "2021-11-03", "datePublished": "2021-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychrobacter sanguinis" ], "sample_taxid": [ "861445" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "0.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3395570", "Number of Sequences": "4", "Longest Sequences (bp)": "3315063", "N50 (bp)": "3315063", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "2851", "Average Protein Length": "322.7", "Coding Ratio (%)": "81.3", "Number of rRNAs": "15", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychrobacter sanguinis", "strain": "strain=FDAARGOS_1598", "accession": "GCA_020736705.1", "taxid": 861445, "species_taxid": 861445, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1127, "total_fragments": 1130, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychrobacter phenylpyruvicus", "strain": "strain=NCTC10526", "accession": "GCA_900455955.1", "taxid": 29432, "species_taxid": 29432, "relation_to_type": "type", "validated": true, "ani": 83.1139, "matched_fragments": 674, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter phenylpyruvicus", "strain": "strain=DSM 7000", "accession": "GCA_000685805.1", "taxid": 29432, "species_taxid": 29432, "relation_to_type": "type", "validated": true, "ani": 82.7879, "matched_fragments": 654, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter phenylpyruvicus", "strain": "strain=NBRC 102152", "accession": "GCA_001591185.1", "taxid": 29432, "species_taxid": 29432, "relation_to_type": "type", "validated": true, "ani": 82.6189, "matched_fragments": 645, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter lutiphocae", "strain": "strain=DSM 21542", "accession": "GCA_000382145.1", "taxid": 540500, "species_taxid": 540500, "relation_to_type": "type", "validated": true, "ani": 78.8895, "matched_fragments": 317, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter coccoides", "strain": "strain=F1192", "accession": "GCA_017498085.1", "taxid": 2818440, "species_taxid": 2818440, "relation_to_type": "type", "validated": true, "ani": 77.83, "matched_fragments": 133, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter faecalis", "strain": "strain=DSM 14664", "accession": "GCA_016107575.1", "taxid": 180588, "species_taxid": 180588, "relation_to_type": "type", "validated": true, "ani": 77.8265, "matched_fragments": 187, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_904846495.1", "gtdb_species": "s__Psychrobacter sanguinis", "ani": 96.9577, "matched_fragments": 925, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.88", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_900162825.1", "gtdb_species": "s__Psychrobacter piechaudii", "ani": 83.6271, "matched_fragments": 575, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002385225.1", "gtdb_species": "s__Psychrobacter sp002385225", "ani": 83.521, "matched_fragments": 647, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000685805.1", "gtdb_species": "s__Psychrobacter phenylpyruvicus", "ani": 82.7854, "matched_fragments": 654, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900162815.1", "gtdb_species": "s__Psychrobacter pasteurii", "ani": 82.1253, "matched_fragments": 600, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009725675.1", "gtdb_species": "s__Psychrobacter sanguinis_A", "ani": 80.0616, "matched_fragments": 480, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018260395.1", "gtdb_species": "s__Psychrobacter sp018260395", "ani": 79.8786, "matched_fragments": 388, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002313155.2", "gtdb_species": "s__Psychrobacter sp002313155", "ani": 79.621, "matched_fragments": 394, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": 0.331, "growth_tmp": 37.0, "optimum_tmp": 33.5, "optimum_ph": 7.222, "genome_size": 3154087.83, "gc_content": 42.3, "coding_genes": 2421.833, "rRNA16S_genes": 4.875, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.333, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.666, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Psychrobacter", "sanguinis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }