{ "type": "genome", "identifier": "GCF_020783655.1", "organism": "Xanthomonas melonis", "title": "Xanthomonas melonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Exeter", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020783655.1", "bioproject": "PRJNA224116", "biosample": "SAMN22555469", "wgs_master": "JAJGQH000000000.1", "refseq_category": "reference genome", "taxid": "56456", "species_taxid": "56456", "organism_name": "Xanthomonas melonis", "infraspecific_name": "strain=NCPPB 3434", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/07", "asm_name": "ASM2078365v1", "asm_submitter": "University of Exeter", "gbrs_paired_asm": "GCA_020783655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/783/655/GCF_020783655.1_ASM2078365v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4675418", "genome_size_ungapped": "4675418", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020783655.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4014", "protein_coding_gene_count": "3873", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-07", "dateModified": "2021-11-07", "datePublished": "2021-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonas melonis" ], "sample_taxid": [ "56456" ], "sample_host_organism": [ "Cucumis melo" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "1.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4675418", "Number of Sequences": "35", "Longest Sequences (bp)": "418558", "N50 (bp)": "240150", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3935", "Average Protein Length": "342.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xanthomonas melonis", "strain": "strain=NCPPB 3434", "accession": "GCA_020783655.1", "taxid": 56456, "species_taxid": 56456, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1537, "total_fragments": 1540, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Xanthomonas cassavae", "strain": "strain=NCPPB 101", "accession": "GCA_020783895.1", "taxid": 56450, "species_taxid": 56450, "relation_to_type": "type", "validated": true, "ani": 88.3385, "matched_fragments": 1264, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas cassavae", "strain": "strain=CFBP 4642", "accession": "GCA_000454545.1", "taxid": 56450, "species_taxid": 56450, "relation_to_type": "type", "validated": true, "ani": 88.3195, "matched_fragments": 1298, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas floridensis", "strain": "strain=WHRI 8848", "accession": "GCA_001642575.1", "taxid": 1843580, "species_taxid": 1843580, "relation_to_type": "type", "validated": true, "ani": 88.2496, "matched_fragments": 1342, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas cucurbitae", "strain": "strain=CFBP2542", "accession": "GCA_002939885.1", "taxid": 56453, "species_taxid": 56453, "relation_to_type": "type", "validated": true, "ani": 88.201, "matched_fragments": 1196, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas pisi", "strain": "strain=DSM 18956", "accession": "GCA_001010415.1", "taxid": 56457, "species_taxid": 56457, "relation_to_type": "type", "validated": true, "ani": 86.9571, "matched_fragments": 1008, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas nasturtii", "strain": "strain=WHRI 8853", "accession": "GCA_001660815.1", "taxid": 1843581, "species_taxid": 1843581, "relation_to_type": "type", "validated": true, "ani": 86.6881, "matched_fragments": 1238, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas euvesicatoria pv. alfalfae", "strain": "strain=CFBP 3836", "accession": "GCA_000488955.1", "taxid": 359387, "species_taxid": 456327, "relation_to_type": "pathovar", "validated": true, "ani": 86.5176, "matched_fragments": 1274, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas euvesicatoria pv. alfalfae", "strain": "strain=CFBP3836", "accession": "GCA_017724035.1", "taxid": 359387, "species_taxid": 456327, "relation_to_type": "pathovar", "validated": true, "ani": 86.4956, "matched_fragments": 1280, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas euvesicatoria", "strain": "strain=ATCC 11633", "accession": "GCA_020880415.1", "taxid": 456327, "species_taxid": 456327, "relation_to_type": "type", "validated": true, "ani": 86.363, "matched_fragments": 1235, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas phaseoli", "strain": "strain=CFBP2534", "accession": "GCA_017745345.1", "taxid": 1985254, "species_taxid": 1985254, "relation_to_type": "pathovar", "validated": true, "ani": 86.3452, "matched_fragments": 1264, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas phaseoli", "strain": "strain=NCPPB 3035", "accession": "GCA_000774035.2", "taxid": 1985254, "species_taxid": 1985254, "relation_to_type": "pathovar", "validated": true, "ani": 86.333, "matched_fragments": 1241, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas citri", "strain": "strain=ICMP5732", "accession": "GCA_021474205.1", "taxid": 346, "species_taxid": 346, "relation_to_type": "pathovar", "validated": true, "ani": 86.2841, "matched_fragments": 1285, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hydrangeae", "strain": "strain=LMG 31884", "accession": "GCA_905142475.1", "taxid": 2775159, 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melonis", "ani": 99.996, "matched_fragments": 1535, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002939785.1", "gtdb_species": "s__Xanthomonas codiaei", "ani": 88.7096, "matched_fragments": 1352, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012848175.1", "gtdb_species": "s__Xanthomonas campestris_C", "ani": 88.6199, "matched_fragments": 1312, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000454545.1", "gtdb_species": "s__Xanthomonas cassavae", "ani": 88.3107, "matched_fragments": 1299, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xanthomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001642575.1", "gtdb_species": "s__Xanthomonas floridensis", "ani": 88.262, "matched_fragments": 1341, 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