{ "type": "genome", "identifier": "GCF_020831365.1", "organism": "Massilia agrisoli", "title": "Massilia agrisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020831365.1", "bioproject": "PRJNA224116", "biosample": "SAMN22870559", "wgs_master": "JAJHPV000000000.1", "refseq_category": "reference genome", "taxid": "2892444", "species_taxid": "2892444", "organism_name": "Massilia agrisoli", "infraspecific_name": "strain=MAHUQ-52", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/10", "asm_name": "ASM2083136v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_020831365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/831/365/GCF_020831365.1_ASM2083136v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4677454", "genome_size_ungapped": "4676991", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020831365.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4323", "protein_coding_gene_count": "4211", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-10", "dateModified": "2021-11-10", "datePublished": "2021-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia agrisoli" ], "sample_taxid": [ "2892444" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Bangladesh: Magura" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4677454", "Number of Sequences": "25", "Longest Sequences (bp)": "1157747", "N50 (bp)": "455629", "Gap Ratio (%)": "0.009899", "GCcontent (%)": "63.6", "Number of CDSs": "4233", "Average Protein Length": "335.3", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia polaris", "strain": "strain=RP-1-19", "accession": "GCA_012927275.1", "taxid": 2728846, "species_taxid": 2728846, "relation_to_type": "type", "validated": true, "ani": 89.1333, "matched_fragments": 1191, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 88.018, "matched_fragments": 1298, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 85.5715, "matched_fragments": 1025, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 82.7465, "matched_fragments": 1005, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 82.3454, "matched_fragments": 1000, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 82.2984, "matched_fragments": 976, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rubra", "strain": "strain=CCM 8692", "accession": "GCA_011682065.1", "taxid": 2607910, "species_taxid": 2607910, "relation_to_type": "type", "validated": true, "ani": 82.202, "matched_fragments": 996, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia frigida", "strain": "strain=CCM 8695", "accession": "GCA_011682175.1", "taxid": 2609281, "species_taxid": 2609281, "relation_to_type": "type", "validated": true, "ani": 82.1909, "matched_fragments": 976, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 81.5061, "matched_fragments": 909, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia arenae", "strain": "strain=GEM5", "accession": "GCA_008014745.1", "taxid": 2603288, "species_taxid": 2603288, "relation_to_type": "type", "validated": true, "ani": 81.3928, "matched_fragments": 885, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 81.34, "matched_fragments": 908, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": "type", "validated": true, "ani": 81.3192, "matched_fragments": 872, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia pinisoli", "strain": "strain=JCM 31316", "accession": "GCA_024753285.1", "taxid": 1772194, "species_taxid": 1772194, "relation_to_type": "type", "validated": true, "ani": 80.4686, "matched_fragments": 830, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012927275.1", "gtdb_species": "s__Massilia sp012927275", "ani": 89.1244, "matched_fragments": 1192, "total_fragments": 1547, 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