{ "type": "genome", "identifier": "GCF_020859565.1", "organism": "Saccharothrix luteola", "title": "Saccharothrix luteola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_020859565.1", "bioproject": "PRJNA224116", "biosample": "SAMN22908781", "wgs_master": "JAJHUO000000000.1", "refseq_category": "reference genome", "taxid": "2893018", "species_taxid": "2893018", "organism_name": "Saccharothrix luteola", "infraspecific_name": "strain=NEAU-S10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/13", "asm_name": "ASM2085956v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_020859565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/859/565/GCF_020859565.1_ASM2085956v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10305394", "genome_size_ungapped": "10304904", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_020859565.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "9307", "protein_coding_gene_count": "9090", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-13", "dateModified": "2021-11-13", "datePublished": "2021-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharothrix luteola" ], "sample_taxid": [ "2893018" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Chifeng" ], "sample_host_location_id": [], "data_size": "2.735 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 16.67, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10305394", "Number of Sequences": "59", "Longest Sequences (bp)": "466216", "N50 (bp)": "234034", "Gap Ratio (%)": "0.004755", "GCcontent (%)": "71.8", "Number of CDSs": "9337", "Average Protein Length": "332.4", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 91.928, "matched_fragments": 2382, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 90.7537, "matched_fragments": 2306, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix saharensis", "strain": "strain=DSM 45456", "accession": "GCA_006716745.1", "taxid": 571190, "species_taxid": 571190, "relation_to_type": "type", "validated": true, "ani": 90.2467, "matched_fragments": 2283, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix deserti", "strain": "strain=BMP B8144", "accession": "GCA_009769385.1", "taxid": 2593674, "species_taxid": 2593674, "relation_to_type": "type", "validated": true, "ani": 88.1106, "matched_fragments": 2209, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix ecbatanensis", "strain": "strain=DSM 45486", "accession": "GCA_014205015.1", "taxid": 1105145, "species_taxid": 1105145, "relation_to_type": "type", "validated": true, "ani": 87.5448, "matched_fragments": 2119, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix syringae", "strain": "strain=NRRL B-16468", "accession": "GCA_009498035.1", "taxid": 103733, "species_taxid": 103733, "relation_to_type": "type", "validated": true, "ani": 84.8454, "matched_fragments": 2105, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix syringae", "strain": "strain=NRRL B-16468", "accession": "GCA_000716755.1", "taxid": 103733, "species_taxid": 103733, "relation_to_type": "type", "validated": true, "ani": 84.796, "matched_fragments": 2068, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix tamanrassetensis", "strain": "strain=CECT 8640", "accession": "GCA_014203665.1", "taxid": 1051531, "species_taxid": 1051531, "relation_to_type": "type", "validated": true, "ani": 83.7234, "matched_fragments": 1677, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 83.5135, "matched_fragments": 1527, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 83.3775, "matched_fragments": 1674, "total_fragments": 3407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix espanaensis", "strain": "strain=type 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